Trachemys scripta elegans (red-eared slider): 117868132
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Entry
117868132 CDS
T07347
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117868132 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117868132 (ARID1A)
03021 Transcription machinery [BR:
tst03021
]
117868132 (ARID1A)
03036 Chromosome and associated proteins [BR:
tst03036
]
117868132 (ARID1A)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Helix-turn-helix
ARID
117868132 (ARID1A)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117868132 (ARID1A)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117868132 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117868132
NCBI-ProteinID:
XP_034609639
LinkDB
All DBs
Position
20:10223020..10301532
Genome browser
AA seq
2275 aa
AA seq
DB search
MAAQVAPAAASSLGAPAPAELKKAEAQQRDCPPEEAGGEAVAERGGEKQAESEGPPGKEL
QDGAESNGGDAGAEPDLKSSNGNAGPRPAAAAATLNNNLPEPPGGGGGSSDGVGAPQQQP
PPPQQPPPSHPAALPPPAYGFGQPYGRGAQAAAVAAAAAAAFHQHGGQQSTGMAALQSGG
LEQPYPGPAGAPPGPPPPQNSHGGAEHGFPNHQYNSYYPAAAGRSAGAYPPPPQAYALSS
PRGSTQSPAQAAAGAKSPAAAAAFQQQRFGAMGPSAAGGAAGGGGATPQPTATPTLNQLL
TSPSSARGYQGYPGGDYSSGPQDGGAAAKGPAADMASQYGGGNSQAWATATGGGQQRSHH
APMSPGSSSAGGGQPLARTQQPSSPMDQMGKMRPQPYGGSNPYTQQQGPQSGPQQGHGYP
GQPYGPQTPQRYSMGIQGRTQSAMGSISYAQQIPPYGQQGPSAYGQQSQTPYYNQQSPHS
QQQQPPYSQQPPSQTSHSQTSYQQQQTPSQPTQLPSSQPPYSQQQSQPPHQQSPSPYPQQ
QPAAQQHQQSQPPYSQQQSQSPYQQQQQTPQTASSALSQQSSSYPPSQPQQQQQSAYSQQ
RFPPPQELSQDSFGSQASSAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDDLPMGTEGA
LSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSP
AAVPGNQMPPRPPSGHSDSIMHPSMNQSSIVQDRGYMQRNPQMPQYSSPQPGSALSPRQS
SGGQMHAGMGAYQQNSLGSYGPQGGQYGPQGGYPRQPNYNAMPNANYPSPVMGGSINPMG
AGSQMHGQTGVQPYTGLPPGRMSHAAIGNRPYGPNMANMPPQVGTGMCPPPGGMNRKAQE
AAAAAMHAAANSIQNRPPGYPNMNQGGMMGTGAPYGQGINSMAGMINPQGPPYPMSGNMA
NNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELG
GEPERKIWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRE
LATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSP
AGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQDAFADGSD
PTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSSGQGPNTGM
GDPYNRAAGPGMGNMALGQRQHYPYGGPYDRVRTEPGMGPEGSLGTGTPQANIMPSTPDS
GMYSPSRYPQQQQQQQRHDSYGNQFSTQGTSSGSPFPSQQTTIYQQQQQNYKRPMDGNYG
PPAKRHEGEMYNVSYSTGQGQAQQQLPTAQTQQPSQQQTAQPYTCPAVENQYGSTYPATD
RRPAGGPQNQFPFQFGRDRVSAPPGSTAQQNMPPQMMGGPIQSTPEGLQQGTLWQGRNEI
GYSYPNRQSSGSAAQGPAYHGVNRTDEILHSDQRVNHEGPWPSHGNRQPPYGPSAPVPPM
TRPPQPNYQTPPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPVPASH
IASAAVQPPMIRRDITFPPGSVEATQPVLKQRRRLTTKDIGTPEAWRVMMSLKSGLLAES
TWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQKTL
LDPERFCKSSSPPPEKGDEEEEPQSPNSEEEEEEEEEEAAFASKDKAPLESNEEKLVSKF
DKLPVKIVQKNDPFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFESKMELLLTH
KRASCNSALRKRSAAESNPGTRERENLPSDGPPEKRITATMDDMLSARPGSLAEEEVKNS
EATKESSKFPFGSSPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCVCVSNIIRS
LSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWW
DCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFPTLGPNA
VLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKVYSTMVRFLSDRKNPVCREMAVVL
LANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLATTQFQQSQASLMHMQNPPFESTSVDM
MRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6828 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgcccccgccgccgccagcagcctgggcgccccggctccagccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggcgaggcg
gtggcggagcgcggcggcgagaagcaggcggagagcgagggccccccggggaaggagctg
caggacggggccgagagcaacggaggggacgccggggccgagcccgacctgaagagctcg
aacgggaacgcgggccccaggcccgccgctgccgccgccaccctgaacaataacctcccg
gagccgcccggtggcggcggcggcagcagcgacggggtgggggcgccgcagcagcagccg
ccgccgccgcagcagcctcccccttcccacccggccgccttgcccccgccagcctacggc
ttcgggcagccctacggccggggagcccaggctgctgccgtcgctgccgccgccgcggct
gccttccaccaacatggcggacaacaaagcactggcatggcagcgctgcagagcgggggc
ctggagcagccctacccgggaccggcgggggcccccccggggccgccccctccccagaac
tcgcacggcggcgccgagcacggcttccccaaccaccagtacaactcttactacccggcg
gcagccgggcgcagcgccggcgcctacccgcctcccccccaggcctacgccctgagctcc
ccccggggcagcacgcagagccccgcgcaagcggccgccggggccaaatcccccgccgcc
gccgccgccttccagcagcagcgcttcggggccatggggccctcggccgccggcggggca
gcaggaggagggggcgccaccccgcagcccacagcgacccccaccctcaaccagctgctt
acctcccccagctcagcccgtggctaccagggctaccccgggggcgactacagcagcggg
ccccaggacgggggagccgccgccaagggcccggccgcggacatggcctcccagtacggt
gggggcaatagccaggcctgggccacggccacaggagggggccaacaaaggagccaccac
gcgcccatgagccccgggagcagcagcgctggagggggacagccgctcgctaggacccag
cagccatcgagcccaatggatcagatggggaagatgagacctcagccatatggaggaagt
aacccgtacacacagcagcagggacctcagtcgggaccacagcaaggacatggatatcca
gggcagccatatgggccacagactccccagagatattccatgggaattcaaggcaggacg
cagagtgcaatgggcagcatctcatatgcacagcagattcctccttatggacagcagggc
ccaagtgcctatggacagcagagccagactccatattacaaccagcaaagtcctcattcc
cagcaacagcagcctccctactctcagcaaccaccatcccagacctctcactcccaaact
tcttatcaacagcagcagactccgtctcaacctacacagcttccgtcatcccagcctcca
tactcccagcagcagtcccaaccacctcatcagcagtccccatcaccgtatccccagcag
cagcccgcggcccagcaacatcaacagagtcagcctccatactcccagcagcagtcacag
tcgccctaccagcagcagcaacaaacgccgcaaaccgcctcttctgctctttctcagcag
tcgtcttcgtaccctccgtcacaaccgcagcaacagcagcagtccgcgtactcccagcaa
cgcttcccgccgccacaggagttatctcaagactcatttgggtcccaggcatcatctgcc
ccctcaatggcttccagtaaaggacaagaagatatgaacttgaatcttcagtcaaggccc
tccagcctgccggatctgtctggttcaatagatgatctacccatgggtacagaaggagcc
ctgagtcctggagtaagcacgtcagggatttcaagcagtcaaggagaacagagtaaccca
gctcagtctcctttctctccgcatacctcgcctcacctcccaggaatcagaggaccctcc
ccttcccctgttggctctcctgctagtgttgctcagtcgcgttctggtccactctcacct
gctgcagtaccaggcaatcagatgccaccccgaccacctagtggccattcggacagtatc
atgcatccttccatgaatcagtcaagcatagtccaagatcgaggttacatgcagcgaaat
cctcagatgccccagtacagctcccctcagcctggctccgccttatctccacgtcagtct
tctggaggacagatgcatgctgggatgggagcgtatcagcagaattcactgggaagctat
ggtccccaggggggtcagtatggtcctcaaggaggttatcccagacagccaaactataat
gctatgcctaatgccaactaccccagcccagtaatggggggaagtataaacccaatggga
gcagggagccagatgcatggtcagactggtgtgcaaccctatactgggcttcccccagga
aggatgagccatgcagccatagggaacaggccctatggacccaacatggcaaatatgcct
ccccaggtggggacagggatgtgcccaccaccaggtggcatgaaccggaaagcacaagaa
gcagctgctgctgccatgcatgctgccgccaactccatccagaacaggcctcctggctat
cccaacatgaaccaaggggggatgatgggaactggagctccttatggacaaggaattaac
agtatggctggcatgataaacccccagggtcctccatatcctatgagtgggaatatggcc
aacaactcggcagggatggcagcaagtcctgagatgatgggccttggggatgtaaaattg
acgcctgcaactaaaatgaacaataaggcagatgggacgccaaaaacagaatccaaatca
aagaaatccagttcctctactaccaccaatgagaagattaccaaattgtatgagctgggt
ggtgagccggagaggaagatttgggtagatcgctacctagccttcactgaagagaaggca
atgggcatgaccaacctcccagctgtgggcaggaaacccctagacctttaccggctctat
atctctgtaaaggagattggaggactgactcaggtcaacaaaaacaagaaatggcgtgag
ttagcgaccaatcttaatgtgggcacctctagcagcgcagctagttctttgaagaagcag
tacatccaatgtctctatgcctttgagtgcaagattgaacgaggcgaagacccaccccca
gacatctttgcagctgctgattcaaagaagtcccagcccaagatacagcccccatctcca
gcgggttcaggctccatgcaggggcctcagacacctcaatccaccagcagctctatggca
gagggaggagatttgaaaccaccaacgccagcgtctacgccacacagtcagatgccccct
ttgccaggcatcaggagtaactcagtaggtcttcaggatgcctttgcagatggcagtgac
cccacgttccagaagcggaactccatgactccaaatcccgggtaccagcccagcatgaat
acctctgacatgatgggtcgcatgtcctacgagccaaataaggatccttacagcagtatg
aggaaagctccaggaagtgaccccttcatgtcctcagggcagggccccaacactggtatg
ggtgacccgtataatcgtgctgcaggtccagggatgggtaacatggccctgggacaacgg
caacattatccctatggaggtccttacgacagagtgaggacggagccaggaatgggacca
gagggcagcttaggaaccggaactccccaggccaacattatgccttccacccctgactca
gggatgtactctcccagccgctatccacagcagcaacagcagcagcaacgacatgattcc
tatggcaatcagttctccactcaaggcacatcctctggcagtccctttcccagtcagcaa
accaccatctatcaacaacaacagcagaattacaagcgaccgatggatggcaattatggc
ccgcctgccaagcgacacgaaggggagatgtacaacgtctcgtacagcaccgggcagggg
caggcgcagcagcagctgcctacagcacagacccaacaaccgagccagcagcaaactgca
cagccttatacatgtcctgctgtggagaaccagtatgggagtacatatcctgccaccgac
cgccgacctgcaggagggccgcagaaccagttcccattccaatttggcagagacagggtc
tccgctcccccaggctcgactgcccagcagaatatgccaccccagatgatgggtggtcct
atacaatctactccagagggcctgcagcagggcaccttgtggcaagggcgcaatgaaata
gggtacagctatccaaatcggcagagttcgggctctgcagcccaggggcctgcttatcac
ggagtgaatcgaacagatgaaattctacattcagatcagagggtaaatcacgaggggcca
tggccctcccatgggaaccgtcagcctccttatggtccttctgccccggtacccccaatg
acaaggcccccacagcctaactaccagacccctcctagcatgcagaatcacattcctcag
gtatctagcccagcacctctgcccagacctctggagaaccgcacctcacccagcaaatct
ccgttcctgcactcggggatgaaaatgcagaaagcaggacctcccgtccctgcctcgcat
atagcctcagcagccgtacagcctcccatgatacgacgggacatcaccttcccacccgga
tcagtggaagctacgcagcctgtgttgaagcaaaggagacggctgacaacaaaagatatt
ggaactcctgaagcatggagagtgatgatgtctctgaagtctgggctgctggctgaaagt
acgtgggccttagataccataaacatcctgctctatgatgacaacagcataatgaccttc
aacctcagccagctgccagggttgctggaactgctggtggaatatttccggcgttgcctg
atcgaaatctttgggatcctaaaggaatatgaagtgggagatccgggacaaaaaacacta
ttagatcctgaaagattctgcaagtcttcaagtccccctcctgaaaagggggatgaagag
gaggagccacagagccctaactctgaggaagaggaggaggaagaggaagaggaggctgca
tttgcaagtaaagacaaagcacccctagagagcaatgaagaaaaactagtcagtaaattt
gacaagcttccagtcaagatagtgcagaagaatgacccatttgtggtagattactcagac
aagctggggcgagtacaggagtttgaaagtggattgctgcactggcggattggtggtgga
gacaccactgaacacattcaaacccactttgagagcaaaatggagctactgttaactcac
aaacgagcttcctgcaactctgccttgagaaaacgttctgcagctgagagcaatccggga
actagagagagggagaatctgccatctgatggtcccccggagaaaaggataaccgctact
atggatgacatgctttcggcacggccaggctcactggcggaggaggaggtcaaaaactcg
gaagcaacaaaggaaagcagcaaatttccatttggcagtagtccagctcagagccacaga
aatatcaaaattctggaggatgaacctcacagtaaagatgagacacccctgtgcaccctt
ctagactggcaagactctctagctaaacgctgcgtctgtgtgtctaacatcatcaggagt
ttatcgtttgtgccgggcaatgactttgaaatgtctaagcaccccggtctgctgctgatt
ctagggaaactgattctcctgcaccacaagcatccagaacgcaaacaggcaccactgacc
tacgagaaggaagaggagcaggaccaaggggtgagctgcaacaaggtggagtggtggtgg
gactgcttggagatgctgcgtgaaaacacgctggttacgctggccaacatttctggtcag
ttggacctctccccgtacccggaaagcatctgtttgcctgtcttggatggactcctccac
tgggcagtatgtccatccgcagaggcccaggatcctttcccaaccctggggcctaatgct
gtcctctcccctcagagactggttttggaaactctcagcaaactcagcatccaggataac
aacgtggatttgattcttgcaactcccccctttagtcgcttggagaaggtctacagcacc
atggtgcgcttccttagtgacagaaagaacccagtgtgtcgagagatggctgtggtacta
ctggccaacttggcacagggcgacagcctggcagctagagcaattgcagtgcagaagggc
agcattggcaacttgttgggcttcttggaggacagcctggcaaccactcagttccagcag
agtcaggccagcttgatgcacatgcaaaaccctccctttgagtcgacaagtgtggacatg
atgcgtcgggcagctcgggcgctgcttgccctggccaaagtggacgagaaccactctgag
ttcacgttatacgagtcgcggctgttggacatctccgtgtcgcctttgatgaactcgttg
gtttcacaagttatttgtgatgtactgtttttaattggccagtcatga
DBGET
integrated database retrieval system
