Trachemys scripta elegans (red-eared slider): 117868210
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Entry
117868210 CDS
T07347
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03015
mRNA surveillance pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117868210 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
117868210 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117868210 (PABPC4)
03041 Spliceosome [BR:
tst03041
]
117868210 (PABPC4)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117868210 (PABPC4)
mRNA cycle factors
Stress granule specific factors
117868210 (PABPC4)
Spliceosome [BR:
tst03041
]
Complex C
Other components
Complex C specific factors
117868210 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
117868210
NCBI-ProteinID:
XP_034609879
LinkDB
All DBs
Position
20:complement(7715876..7735979)
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AA seq
630 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYSPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAQASRSLPAA
AQRVGVTTAAQNLAPRPPVTAPAPRAVPPYKYASTVRSPHPAVQPLQVPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatacggctgctagtagctacccgatggcgtcattgtatgtgggcgacctgcaccct
gatgtcaccgaggccatgttatatgagaagttcagccctgctgggcctgtactctccatc
cgagtctgcagggatatgatcacccgtcgctccctgggatatgcctatgttaacttccag
cagccagctgatgctgagcgtgctctagacaccatgaacttcgatgtgatcaaaggcaaa
cccatccgcattatgtggtctcagcgagacccctctctgaggaagtcgggggttgggaat
gtcttcatcaagaatctggacaaatccatagacaacaaggcactttatgacacattctca
gcatttgggaatatcttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagacagagccatcgagaagatgaatggc
atgctgctaaacgaccgcaaagtatttgttgggagattcaagtcccgtaaggagcgggag
gctgagctgggagccaaagcaaaggagttcaccaatgtttatattaaaaattttggggat
gacatggatgatgagagactaaaggagctcttcagcaaatatggcaagacactgagtgtt
aaggtgatgacagatcccactggaaagtccaaaggctttgggttcgtgagcttcgaaaaa
catgaagatgccaacaaggcagtggaagaaatgaatggaaaggatattaatggaaaaatg
gtatttgtaggccgggcacagaagaaagtagagcgccaggcagagctgaaacggaagttt
gagcagctgaaacaagagagaatcagccggtaccagggtgttaatctgtacattaagaac
ctagatgacactattgatgatgaaaaactgaggaaggagttttcgccttttgggtctatt
acaagtgccaaggtgatgctggaggatggacgaagcaaagggtttggcttcgtctgcttt
tcctctccagaagaagctaccaaagccgtgactgagatgaatgggcgtatcgtgggctcc
aagccattgtatgttgcgctggcacagaggaaagaggagcgaaaggcccacctcactaat
cagtatatgcagcgcattgctggaatgagagccctgcctgcgaacacaatcattaaccag
ttccagccagctgctggggggtacttcatgcctgctgtgccccaggctcagagcagaccc
acttactattcacccaatcagatgacgcagatgagacctaacccacgctggcagcaaggg
gggagacctcaaggattccaaggaatgccgaatgccatgcgccagtccggaccgcgccca
gcactgcgccatctggctcctgctggcaatgctcaggcctctcgtagcctccctgctgct
gcccagagagttggcgtcaccacggcagctcagaatttagcccctcgtccgcctgtaact
gccccggctcccagagcagttcccccttataaatatgcctcaacggtccgcagcccacac
ccagcagtacagcctttgcaggtacctcagcctgcggtacacgtccagggacaggaacct
ttaactgcgtctatgctagctgctgcccctccccaggaacagaaacagatgctgggagaa
cgtttgttccccctgatccaagctatgcaccccagccttgcagggaagatcacaggaatg
ctactagagattgacaattcagagctactgcacatgctggagtctccagaatccctccgg
tcaaaggtggaggaggctgttgcagtgttgcaggctcaccaagccaagaaagaagctgcc
cagaaggtgggcgtggttgctgctacctcttaa
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