Trachemys scripta elegans (red-eared slider): 117868429
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Entry
117868429 CDS
T07347
Symbol
SRRM1
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117868429 (SRRM1)
03015 mRNA surveillance pathway
117868429 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117868429 (SRRM1)
03041 Spliceosome [BR:
tst03041
]
117868429 (SRRM1)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117868429 (SRRM1)
Spliceosome [BR:
tst03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
117868429 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
BAF1_ABF1
Motif
Other DBs
NCBI-GeneID:
117868429
NCBI-ProteinID:
XP_034610245
LinkDB
All DBs
Position
20:8648344..8677105
Genome browser
AA seq
905 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEDKDSREKRDRSRSPRRRKSRSPS
PRRRSSPVRRERKRSHSRSPRHRTKSRSVTPAPEKKEETPEPEPSVQAKETLIQEATSTS
DILKVPKPEPVPDTKETSPERNSKKEREKEKEKTRQRSPSRSKSRSRSRSHSPSHSRPRR
RHRSRSRSYSPRRRPSPRRRPSPRRRSPPRRMPPPPRHRRSRSPLRRRRRSSASLSGSSS
SSSSSRSRSPPKKTPKRIVSSPPRKTRKLSPSASPPRRRHRPSPPASPPPKPRRSPTPQQ
SNRGRKVRGSISPSRASAPKHKSIEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQ
RRQYRRQNQQSSSDSGSSSSSEEERPKRSNVKNGEVGRRRRHSHSPSPSPRKRQKDSSPR
MQIGKRWQSPMIKRRRRSPSPPPARRRRSPSPAPPPRRRRSPSLPRRRSPSPPPRRRSPT
PRRYSPPIQRRYSPSPPPKRRTATPPPPPKRRASPSPQPKRRVSHSPPPKQRSSPVAKRR
SPSISSKHRKSSPSSRSNRETRSPLQNKRHSPSPRPRASHTSASPPPLRRGTSSSPKRRQ
SPSPSSRPIRRVSRTPEPKKTKASTPSPQSVRRVSSSRSASGSPEPAPKKHQAPPSPTGS
RSPSTNWSPPHVKKAQSPTQSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKE
KAAAAAAVAAATSAATSSAQEDPEAETEPKKETESEAEDNLDDLEKHLREKALRSMRKAQ
VSPPS
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgggcttcttccgcggaacgagtgcggagcaggacaatcgcttcagcaacaaa
cagaagaagctgttgaagcagctgaaatttgcagaatgtctagaaaagaaagtggacatg
agcaaagtaaacctggaagtaatcaagccatggataacaaaacgagtaacagaaatcctt
ggatttgaagacgatgtagtaattgaatttatattcaaccagttggaagtgaagaatcca
gattccaaaatgatgcaaatcaacctgactgggtttttgaatgggaaaaatgctagagag
ttcatgggtgaactgtggccactgctgctaagtgcacaagaaaacattgctggtattccc
tctgctttcctggagctcaagaaagaagaaataaaacaaagacagattgagcaagaaaag
ttggcttctatgaagaaacaagatgaagacaaggacaagagagacaaagaggacaaagac
agcagagaaaaaagggacagatccagaagtccaagaagacgcaagtcaaggtctccttcc
cctagaaggaggtcatctcctgtcagaagagagagaaagcgtagccactctcgatctcct
cgtcacagaaccaagagccgtagtgttactcctgcaccagaaaagaaagaggagactcca
gagccagagccttcagtgcaagcaaaggaaacgttgatacaagaggcaacatcaactagt
gatatcctgaaagttcccaaacctgaacctgtaccagatactaaagaaacttccccagaa
cgaaattcaaagaaagagagagagaaagaaaaagagaagactcgtcaaagatcaccatcc
cgttccaaatcaaggtcaaggtctcgctcacattccccttctcattctagaccaagaagg
cgccatagatcacggtcaaggtcttactcccctagaaggcggccaagcccaagacgacga
ccatctcctaggagaaggagtcctccaaggcgcatgcctcccccgcccagacacagaaga
agtagatctcctctgaggcggagaagacggtcatcggcatctttatctggaagtagctct
tcttcctcctcttcacgctctcgatcaccgccaaaaaaaacccctaaaagaattgtatcc
agccctcctcgcaaaacacgtaaactgtctccttctgcaagccctcctaggcggaggcac
aggccttccccaccagcaagtccacctccaaagccacgcaggtctccaacgcctcagcag
tcaaatcgtggaagaaaagtccgtggctctatttctccaagcagagcctcagcacctaaa
cataaaagtattgaaaaaagagagtctccctcaccagcgccaaaacctagaaaagtagaa
ttgtctgaatcagaagaagacaaaggtggcaaaatggctgcagcagattctgtgcaacag
agacgtcagtacagaaggcaaaaccagcagtcttcatctgactctggttcatcatcttcc
tctgaagaggaacgaccaaaaagatcaaatgtgaagaatggtgaagtgggtaggcgcaga
cgacactcgcatagtccatctccttctccacggaaacgacaaaaggactcttcccctcgg
atgcagattggaaagaggtggcaatcaccaatgattaaaaggaggaggaggagtccatca
ccaccacctgccagaagacggcgctctccttctcctgcccctcctccaaggcggcgcaga
tcgccttcattgcctcgccgaaggtctccatcaccacctccacgcaggcgctcacctact
cccagacgatattctcctccaatacagagacgatactctccttccccacctcctaaacga
agaacagcaactccccctcctcctccaaaacgaagggcatcaccttctccacaacccaag
cgcagagtctcgcattctcccccaccaaaacaaagaagttctcccgtggcaaagaggcgt
tccccatcgatatcttcaaagcataggaaaagttctccttccagcaggtctaatcgtgaa
accagatctcctctacaaaacaaacggcattcaccatctccacggcctagagcttcacat
acttctgcaagtccaccgcctctgcgaaggggaacttcatcttcacccaaacggagacag
tctccatctccaagcagtagacccatcaggagagtgtcaaggaccccggaacccaaaaag
acaaaggcttccacaccaagtccacagtctgtgagaagggtgtcttcatccaggtctgca
tcaggatcgcctgagccagcacctaagaaacaccaagcacctccatcccctactgggtct
cgatccccctccactaactggtcaccgccacatgtgaaaaaggctcaaagtcctacgcag
agtccatcccctgcaaggaattctgaccaggaaggtggcgggaagaagaagaagaagaag
aaagataagaagcataaaaaggacaaaaagcacaagaaacacaaaaaacataagaaagag
aaggctgcggctgctgcagcagtggctgctgctacgtcagctgctacttcatcagcccag
gaagacccagaagcagagacagagcccaaaaaggagacagagagcgaagcagaagataac
ctggatgatttagaaaaacatctgcgagagaaggcactgaggtcgatgaggaaggcacaa
gtgtcaccaccatcttag
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