Trachemys scripta elegans (red-eared slider): 117868667
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Entry
117868667 CDS
T07347
Symbol
ARHGEF12
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04270
Vascular smooth muscle contraction
tst04625
C-type lectin receptor signaling pathway
tst04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
117868667 (ARHGEF12)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117868667 (ARHGEF12)
09153 Circulatory system
04270 Vascular smooth muscle contraction
117868667 (ARHGEF12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117868667 (ARHGEF12)
Membrane trafficking [BR:
tst04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
117868667 (ARHGEF12)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
117868667
NCBI-ProteinID:
XP_034610695
LinkDB
All DBs
Position
21:complement(11724673..11818635)
Genome browser
AA seq
1538 aa
AA seq
DB search
MSGTQSTITDRFPLKKPTRHGSILSRETPADKKQKVERCSSAHDFDPTDSSSKKTKSSSE
ESRSETYGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNG
TLVTNSNHGDVVKLIKSGSYVALTVQGRPPGSSQIPLADSEVDPAAFGHMSPIMTSPHSP
GTSGNAERITSPVLMGEENNIVHNQKVEILRKMLQKEQERLQSLQEDYSRAPTSRLLKEI
QETKKHIPQLQEQLSKATGSTQDGVLASRSVTESLQISEVEAESGDGLSKIDYSSGDGSR
PNSDIADSPRSGLKERISLEESPDKSEIQDTDSQSSIGSPSSRMAPQIIGAEDDDFDTEQ
EQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPATLLCYLYTDLYKQTNSKETRRVF
LEFNQFFLDRAANLKVPVPDEISIDLEKRRPELIPEELHRHYIQTMQDKVYPDVQRHLED
FRQKRSMGLTLAENELTKLDAERVRDRITLERERACAEQIIIKIEEVLMTTQPLEEDKSS
TMQYVILTYMKYLGVKVKEPRSLEQKRGRIGFLPKIKQSIKKEKEGEEKVKRRGFPSILG
PPRRPSRHDSSAIGRAMEIQKQRHPKHLSTASSVSPEPPDLVKMRQSGSSSDGTDTTCPP
ANPMSPLAMGPFTSPEGSKDSETGPKQSGDAPPPSDSMDGAPRTPNTIFDFPSPPLDQLQ
EEEGELDRLADLGTPKPFRKMDSVGFGDIQSEDELFDFDTETDPPNWQQLVSQEVLLGLK
PHEIKRQEVINELFYTERAHVRTLKVLHQVFYQRVLREGILTPSDLRKIFSNLEDILLLH
TGLNDQMKAVRKRNETSVIDQIGEDLLTWFSGAGEENLKHATATFCSNQPFALEVIKSRQ
KKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSERPEEKERVKK
AADHCRQILNYVNQAVKESENKQRLEDYQRRLDLSYLKQSEYPMLDEIRNLDLTKKKMIH
EGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDKLVLRCHSKILASTSDSKHTFSPVIKL
NTVLVRQVATDNKAFFVISMSENGAQIYELVAQTVSEKTVWQDLIARMAGTVKVEASKRP
IPLPQSGPGDEEREEEEQQKLKEEQHDIPASGMQSPDKDLGLESPLMLKTQSPSAIMAEK
SEVEDLLGTETRFEKDQRAEESSVCYGPPVPFQISGERWALDALRNLGLLKQLLVQQLGM
AEKGTLEDWRCFPRYRTVSRGAQAESSIQRGLQHSDDKMQQPGTDQMPPGTGTSESAACY
GLRTSTEFPASQDAVQLESRDARFSNNLVMDHVNMNPETPTPELEGVGADDSGEHFFDAR
DAHSDENPLEGEVMERKEDEEVHLRISGNYLILDGYGTVQESSTDEDVSSLVLQCTAGHS
SLDSAHQQPISPRDAQSDEGSSPFAEEFMASRWGPVDELCSDAPSPHLSVESRIQMMQYI
QKIEADLEHLKEVEENYTTLLRQRLAGSAPTDEHSDKS
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcacacagtccacaatcacggacaggtttcctctcaaaaaacctacaaggcat
ggcagcattctgagcagagagactccagctgacaagaaacagaaggttgaacgctgcagt
agtgcacacgacttcgatccgacagatagctcctccaagaagacaaagtctagctcggag
gagagtagatccgagacgtatggtctcgttcagcgctgcgttatcatccagcgggatgaa
aatggatttgggctgacagttagtggagacaatccagtctttgtgcagtcagtcaaagaa
gatggagcagccatgcgggctggagtgcagacaggtgatcgaatcatcaaggtgaatggg
acccttgtaacgaactcaaaccatggggatgtggtgaagctgatcaagtcgggttcctat
gtagctctcactgtgcaggggcgcccaccagggtcgtcccagattccattagctgattct
gaagtggatccagcagcatttgggcatatgtctcccatcatgacatctccccattcgcct
ggcacatctggaaatgcagagagaattactagcccggtgctgatgggggaggagaacaat
attgttcacaaccagaaagtggagattctgagaaagatgctgcagaaagagcaggagcgg
ctgcagtccttgcaagaagattacagccgagcgcccacctcgcgcctgcttaaggagata
caggaaactaagaagcacatccctcagctgcaagagcagctgtccaaagccaccggctct
actcaggatggagttttggcctccagatctgtgacggagtcactgcagattagtgaagta
gaggctgagagtggggatgggctgagcaaaatagactacagcagtggtgacggctcccgg
ccgaacagtgacattgctgatagtccccggagtggcctgaaggaacggatttccctggag
gagagtccagataagagtgagattcaagatactgattctcaatccagtattgggagtccc
tcctcccgcatggcacctcagatcatcggagcagaggatgacgactttgacactgaacag
gagcagattaatgggcaatgcagctgtttccagaacatcgagctgctgaaatctcgcccg
gctcacctggctgtgttcctgcatcatgtggtgtcccagtttgacccagcaacgctgctc
tgctatctttacacggacttgtacaaacagaccaactccaaagagactcgtcgtgtcttc
cttgagtttaaccagttcttcctggaccgagctgcgaatctgaaggttccagttccagat
gaaatatctattgatctagaaaaaagaaggccagaactcattccagaggaattgcaccgc
cattatatccaaactatgcaagataaagtctatccagatgtccagaggcatctggaagat
ttcagacagaagcgtagcatgggattgacgctggccgaaaatgaactgaccaagctggat
gcagaacgtgtccgtgaccggatcacgttggagagagagcgagcgtgtgcggagcagata
attatcaaaattgaggaggtgttgatgactactcagcctctggaagaggacaagagttca
accatgcagtatgtgattctcacctacatgaaatatttgggtgtgaaagtcaaggagccc
cggagcctggagcagaagcgtggacgtattggtttcctgccaaagataaagcaaagtata
aagaaagagaaagaaggggaggaaaaagtgaagaggagaggcttccccagtatcctggga
ccaccacggagaccaagtcgccatgacagcagtgcaattggcagggccatggaaattcag
aagcagcgccatccaaagcacttatccacggcctcttcagttagtccagagccgccagac
ttggtcaagatgcgccagagtgggtcctccagcgatggtacagacactacatgccctcct
gccaatcctatgtctcctttagctatggggccctttacctccccggagggaagcaaggac
agcgagacaggccccaagcagtctggagatgctccacctcctagtgactctatggatggc
gcgccccgcacacctaacaccatctttgatttcccatcccctccgctggaccagctgcaa
gaggaggaaggagaacttgatagattagctgacttgggaacaccaaaacctttccgaaag
atggacagtgtgggctttggggatattcagagtgaggatgagctgtttgattttgacacg
gagactgatcctcccaactggcagcagctggtgagccaagaggtgctgctggggctgaaa
ccccacgaaatcaaacgccaggaagtgattaatgagctgttctacactgagcgagctcac
gtccgtacgctgaaggtgctgcatcaggtcttctaccagcgtgtactccgtgaaggcatc
ctgaccccctctgacctgcgcaaaatcttttcaaacctggaggatatccttctgctccac
actggtttgaatgatcagatgaaagctgtccgtaaacggaatgagacctctgttattgat
cagattggggaagacttgctaacctggttcagtggagcaggcgaggagaacctgaaacac
gcaactgccaccttttgtagtaaccagccttttgctctagaggtgatcaaatcacggcag
aagaaagactctcgcttccaaacttttgtgcaggatgctgagagcaatccactgtgtcgc
cggttgcagctgaaagatatcattcccactgagatgcagaggctgactaagtaccccctt
ctgctggataatatcgctaagtactcagaacggcctgaggagaaggagagagtgaagaaa
gcagcggatcactgccgtcagatccttaactatgtgaaccaggcggtcaaagaatctgag
aataagcagcgtttggaagattatcagcgtcgccttgacctgtcctacttgaagcagtca
gagtaccctatgctggatgagatcaggaatttggatttaaccaagaagaagatgattcac
gaaggacctctgacctggaaagttaatcgggacaagactattgatctctacacgctactc
ttggaggatattctagtgctgttgcaaaagcaagatgataaactggtgctgaggtgtcac
agtaagattctggcatccacttctgacagcaaacacacattcagtcctgttatcaagctg
aacactgtgctggttcgccaggtggcgacagataacaaagctttcttcgtcatctccatg
tcagaaaacggcgcccagatttatgaattggtggcacagactgtttctgaaaagactgta
tggcaggacttgatagctcggatggcagggacagtaaaagtcgaggcatctaaaaggcca
attccattaccacaatcgggacctggcgacgaggagcgtgaggaagaggagcagcagaag
ctgaaagaagaacagcatgatatccctgccagcggtatgcagagtccagataaagatttg
ggacttgagtctcccttgatgctgaagactcagtctccttcagcaatcatggctgagaag
tccgaggtagaagatcttcttgggactgaaacacgttttgagaaagatcaacgggcagaa
gaatcttctgtgtgctacggaccaccagtccctttccagatctcaggagagcggtgggca
ttggatgcgttaagaaacttgggcttgctgaagcagttgttggtgcagcaactgggcatg
gctgagaaggggacccttgaagactggcgatgttttcccaggtataggaccgtttcccgg
ggggcccaggcagagagtagtatccagcgtggactgcagcattctgacgacaagatgcag
cagcctggaacagaccagatgcctcccggaacaggaactagtgaatccgcagcttgttat
ggcctccggacttcaacagagtttccagcttcacaggatgctgtgcagctggagtctaga
gacgccaggtttagtaacaatttagtaatggaccatgtgaacatgaacccggagacccct
accccggagctggaaggggtgggtgctgatgacagtggagagcacttctttgatgctcgt
gacgcccacagcgatgagaacccattggaaggtgaagtaatggagaggaaggaggatgag
gaggtgcacttacggatctcaggaaattatttgatccttgatggatatggaactgtgcag
gagagctctacagatgaggacgtgtcctctctagttctacagtgcactgccggccactcc
tctttggactcagcacaccagcagccgatttccccacgagatgcccagtcagatgaaggg
agctccccgtttgctgaggaatttatggcctcgcgctgggggccagtggacgaattgtgc
tccgatgcaccgagcccccatctctccgtagagtcgcgtatccaaatgatgcagtacatt
cagaagatagaggctgaccttgaacacttaaaggaagttgaggaaaattacaccactctc
cttcgccaaaggctggctggctcagcccccacagatgagcattcagacaaaagttag
DBGET
integrated database retrieval system
