Trachemys scripta elegans (red-eared slider): 117868882
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Entry
117868882 CDS
T07347
Symbol
PTCHD1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tst04990
]
117868882 (PTCHD1)
Domain-containing proteins not elsewhere classified [BR:
tst04990
]
Other domain-containing proteins
Patched domain-containing proteins
117868882 (PTCHD1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
117868882
NCBI-ProteinID:
XP_034611142
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All DBs
Position
1:complement(207248415..207292407)
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AA seq
911 aa
AA seq
DB search
MVLPRLRESFRSHLALLSSLCTRMLRQVLHRGLRTSFSRLGHFIASHPVFFASAPVLISI
LLGASFSRYQIEESVEYLLAPKHSLAKIERNLVNSLFPVNRSKHRLYSDLQTPGRYGRVI
ITSFRKANMLDQHHTDLILKLHSAVTRIQVQRPGFNYTFAHICILNNDKTCIVDDIVHVL
EELKSARSSNRTNFVITYPITHLKDGREVYNGHQLGGVTVHSKDRVKSAEAIQLTYYLQA
INSLNDMVAEKWESIFCDTVELFQKSNRKVKMYPFTSSSLREDFQKTSRVSERYLTTGLV
LVVTLAILCCSMQDCVRSKPWLGLLGLLTVSLATLTAAGIINLTGGKYNSTFLGIPFIML
GHGLYGTFEMLSSWRRTREDQHVKERTAAVFADSMLSFSLTTAMYLVTFGIGASPFTNIE
AARIFCCNSCIAIFFNYLYVLSFYGSSLVFTGYIENNYQHSIFCRKVPKPEVLQEKPAWY
RFLLTAKFSEDTTDSEETNTYESHLLVCFLKRYYCDWITNTYVKPFVVLFYLIYISFALM
GYLQVNEGSDLSNIVATATRTIEYTTAQQKYFSNYSPVIGFYIYESIEYWNTSVQEDVLE
YTKGFVRISWFESYLNYLRKLNISTGLPKKNFTDMLRNSFLKAPQYAHFSEDIIFSKKYN
NEVDVVASRMFLVAKTMETKREELYDLLETLRKLSLTSKVKFIVFNPSFVYMDRYASSVG
APLQNSCISALFLLFFSAFLVADSLINVWLTLTVASVEFGVIGFMTLWKVELDCISVLCL
IYGINYTIDNCAPLLSTFILGKDFTRTKWVKNALEVHGVAILQSYLCYIVGLIPLAAVPS
NLTRTLFRCLFLIALVTFFHCFAILPVILTFVPPSKKKRKEKKNPENREEIECVEMVDMD
STRVVDQITTV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcctcggctccgggagagcttcagatcgcacctcgccctcctgagctccctc
tgcactaggatgttgcggcaggttttgcacagggggctgaggacgtctttttccagactc
ggccacttcattgccagtcacccggtgttcttcgcctccgcacccgtgctgatctcgatt
ttgctgggcgccagcttcagcaggtaccagatcgaggagagcgtggagtatctcctggcc
cccaaacacagcctggccaagatcgagaggaacctggtgaacagccttttcccggtgaac
cgctccaaacaccggctctactctgacctgcagacccctgggaggtacggcagggtcatc
atcacatccttcaggaaggcgaacatgctggaccaacatcatactgatctgatcttaaag
ttacactcagctgtgaccaggatccaagtacaaagacctggtttcaattacacatttgcc
catatatgtatcctgaataatgacaagacttgcatagtggatgacatagtgcatgtactg
gaggagctaaagtctgctcgatcttctaatcgaactaattttgttatcacatatccaatc
actcacttaaaggatggcagggaagtgtataacgggcaccagcttggcggggttaccgtg
cacagcaaagatcgggtgaagtctgcagaagccatccagctcacctactacttgcaggcg
atcaactctctgaatgacatggtagcagaaaagtgggaatccatcttttgtgacactgtc
gaactttttcagaaatccaacaggaaagtcaaaatgtatcccttcacttcgtcttcgctg
agggaggatttccagaagacgagcagggtgtcagaacgttacctgaccacaggcctggtc
cttgtggtcactttggccatactctgctgttctatgcaggattgtgtccgcagcaaacct
tggcttggccttttagggttgttaacggtgagcttagccactctgactgcagctggaatc
atcaatctgactggtgggaaatacaattccaccttcctgggaattcccttcatcatgtta
ggtcatgggttatatgggacttttgaaatgttgtcctcctggaggagaactagagaagac
caacatgttaaagagagaactgcagctgtgtttgcagactccatgctctccttttctctc
accactgccatgtacctggtcacttttggaataggtgccagtcccttcactaacattgaa
gcagcaaggattttctgctgcaattcctgtattgcaattttcttcaactacctctacgta
ctctccttttatggttccagcctggtgtttactggctacatagaaaacaactaccagcat
agtatcttctgcagaaaggtaccaaagccagaggtattgcaagagaagcctgcatggtat
aggtttcttctgacagccaaattcagcgaggacacaaccgattcagaggaaacaaatact
tatgaaagtcatcttttggtgtgtttcctcaaacgctattactgtgactggataacaaac
acttacgtcaagccttttgtagttctcttttaccttatttatatttcctttgccttaatg
ggctacctgcaggtcaatgaagggtcagaccttagtaacatcgtagcaaccgcgacacga
accattgaatacactactgcccagcaaaagtatttcagtaactacagcccagtcattggg
ttttatatctatgagtcaatagaatattggaacacaagtgttcaagaagatgtgctagag
tatactaaagggtttgtgaggatatcttggtttgagagctatttaaattatcttaggaaa
ctcaacatatctactggattgcccaaaaagaattttactgacatgttgaggaactctttc
ctgaaagccccccagtatgcccatttttcagaggatatcatcttttccaaaaaatacaac
aacgaagttgatgtagtagcttcaaggatgttcttggtggctaagacaatggaaaccaag
agagaagaactctatgatctcctggaaaccttgaggaaactctctctcacatccaaggtg
aaattcattgttttcaatccatcattcgtatacatggatcgttacgcctcctcagtggga
gcccccttacaaaattcctgcatcagtgctttatttctgctcttcttctcggcattcctg
gtggcagactctctaatcaatgtctggctcactctaactgttgcctcagtcgaatttgga
gtcataggtttcatgaccttgtggaaagtggaactggactgtatttctgtgttgtgctta
atttatgggattaattatacaattgacaactgtgcgccactgttatcaacctttatcctg
ggcaaagatttcacaagaactaaatgggtaaaaaatgccctagaagtgcacggggtagct
attttacagagctacctctgctatattgttggtctgattcctcttgcagctgtgccttca
aatctgacccgtacactgttcaggtgcttgtttttaatagcattagtcaccttctttcac
tgctttgccattttacctgtgatactgacttttgtgccaccatccaagaaaaaaaggaaa
gagaagaagaatcctgaaaaccgtgaggaaatagagtgtgtcgaaatggtggatatggat
agtacccgagtggttgaccaaattacaacagtttga
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