Trachemys scripta elegans (red-eared slider): 117869437
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Entry
117869437 CDS
T07347
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117869437 (CASC3)
03015 mRNA surveillance pathway
117869437 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117869437 (CASC3)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117869437 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
117869437
NCBI-ProteinID:
XP_034612167
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Position
23:13459510..13465564
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AA seq
425 aa
AA seq
DB search
RFGSPPQREPNWANERQNKPPRPQGSDSDPLPTRTFISRNSTGMGRMPPARNFPRMGGYK
ENRPSYRAVEANSQHLSRTGEQAKHESSYRARRVEQAPERDPSPEAEIAHVHSSPVKKEE
IILESQTPSTDSVQPPPDRPIEKKSYSRARRTRNKVGDAGKLADEVPPPEGLTPVPPKPV
PVVTPPPPAKAGSWETPVESSVDGLEQDMTQLNLTEQTWTQGQPPFIQPRELRGIPNHMH
MGAGPPQFNRMEEMGVQGGRAKRYSSQRQRPPVPEPAPPMHISIMEGHYYDPLQFQGPIY
THSENPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLANPGLYPPPVSMPPGQPPPQQLLA
PTYFSPPGVMNFGNPNYPYPPGALPPPPPPHLYPNTQVSWLKHASVVLSRSSLSMERRDP
ILDGL
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
aggtttgggagccctccgcagcgagagccgaactgggccaacgagaggcaaaacaagcca
ccaagaccccagggctctgatagcgatccgctgccgacacgaaccttcatcagccggaac
tccacgggcatgggtaggatgcccccagccaggaactttccaaggatgggtggctacaaa
gagaaccgtccaagctaccgagctgtggaagcaaacagccagcacctctctcgaacaggg
gagcaggctaaacacgaaagcagttaccgggcaaggcgtgttgaacaagccccggagaga
gacccctctcctgaagctgagattgcgcatgttcatagcagccctgtcaagaaggaagag
atcattttggaaagtcagaccccaagtacagattctgtacagccaccaccagatagaccc
atcgaaaagaaatcctactcccgggcaaggaggaccaggaataaagttggcgatgcagga
aagctggcagatgaagtcccgcctccagaaggattgacgcccgtgcctccgaaaccagtg
ccggtagtgacgccccctccgcctgcaaaggccggtagttgggagacaccagtagaatcc
agcgtggatggactcgaacaagacatgactcagttgaatctaaccgagcagacctggacc
caaggacagcctccgttcatacagcctcgggaacttcggggtattcctaatcatatgcac
atgggagctggaccacctcagtttaacaggatggaggaaatgggagtacaggggggccgt
gcaaagcgttactcatcccagcgtcagcggccaccagttccagagccggctccccccatg
cacatcagcatcatggaagggcactattatgatccactacaattccagggaccaatctac
acacacagcgagaatcctgccccgttgcccccccagggcatgattgtacagccagaaatg
catctcccacatccaggtttacatccacaccagacaccggcacctttggctaaccctggc
ttatatcctccaccagtctccatgcctcctgggcagccacccccgcagcagctgctcgca
cccacctatttctcccctcccggggtcatgaactttgggaatcccaactacccctatccc
ccaggagcactcccaccaccacctcctccccatctgtatcccaacacacaggtgagctgg
ctaaagcacgcttcggttgtcttgagcaggagttctttaagcatggagcgacgggatcct
atcctggatggcctttga
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