KEGG   Trachemys scripta elegans (red-eared slider): 117869758
Entry
117869758         CDS       T07347                                 
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
tst  Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:tst00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tst04131]
    117869758 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tst04147]
    117869758 (COPA)
Membrane trafficking [BR:tst04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    117869758 (COPA)
Exosome [BR:tst04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117869758 (COPA)
  Exosomal proteins of bladder cancer cells
   117869758 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 117869758
NCBI-ProteinID: XP_034612733
LinkDB
Position
24:11436774..11469298
AA seq 1224 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCSQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTQATVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPNAKLLQPPAAIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVDAGEGFGDETLGKGQEEGGGWEVEEDLDLPPELDVPAGPAG
GAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILGGSFETAMRLLHDQVGVTTFGPYKQLFL
QTYARGRTTYQALPCLPAMYGYPHRNWKDAGLKNALPVVGLKLNDLIQRLQVCYQLTTAG
KFEEAVEKFRAILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEQ
QKRTCEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVSQQ
TRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFRGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgctgactaagttcgagaccaagtcggcccgggtgaaagggctcagctttcacccgaag
cgaccctggatcctaacgagtttgcacaatggagtgatccagctgtgggattaccggatg
tgcacccttattgacaaatttgatgagcatgatggaccagtccgagggattgatttccac
aaacagcagccactctttgtctctggaggtgatgactacaaaataaaggtctggaattac
aagctgcgccgctgtcttttcacgctgctcgggcacctggattacattcgcaccaccttc
ttccaccacgaatacccctggatcctgagtgcttctgatgatcagacgatccgggtttgg
aactggcagtccagaacctgtgtttgcgtgctgacaggacacaatcactatgtgatgtgc
tcccagttccatccgtctgaggacctggtggtgtcggccagcttggatcagactgtgcgc
gtttgggatatttctggcctaaggaagaagaatctgtctcctggagctgtggagtcggat
gtcaggggaattactggggtggatttgttcgggacgacagatgcggtggtgaaacatgtt
cttgagggacacgatcgtggggtgaactgggctgccttccaccccaccatgcctctcatc
gtgtctggggctgatgatcggcaggtgaagatctggaggatgaatgaatcaaaggcctgg
gaggtggacacctgccgcggacactacaacaatgtctcctgcgctgtctttcacccacgg
caggagctaatccttagcaattcagaagataagagcatccgtgtctgggatatgtctaag
cgcacgggcgtccagaccttccgccgggatcacgatcgcttttgggtgttggctgctcac
cccaacctcaacctctttgctgcaggccacgacggcggcatgatcgtgttcaagctggag
cgtgagcggcctgcctatgcggtgcacgggaacatgctgtattacgtgaaggaccgtttc
ctgcgccagctcgatttcaacagctccaaagacgttgctgtcatgcagctgagaagtggt
tccaagttcccagtgttcaacatgtcgtacaacccagctgagaatgctgtcctgctctgc
acgagagccagtaacctggagaacagcacctatgacctgtacaccatccccaaggatgca
gactcccagaaccccgatgccccggaagggaagcgttcctctgggctgacagctgtgtgg
gtagctcgcaaccgctttgcagtcctggatcgcatgcattcgatcctaatcaagaacttg
aagaatgagattaccaagaaagtgcaggtcccgaactgtgatgagattttctatgctggc
actgggaacctgttactcagggatgcagactcaatcaccctctttgatgtgcaacagaaa
cgaacccaggctaccgtgaagatctccaaggtgaagtatgtcatctggtcagctgacatg
tcccatgtggctctgttggctaagcatgccatcatgatctgcaacaggaagctggagtcc
ctgtgtaacatccatgagaatatccgcgtcaagagtggcgcctgggatgagagcggtgtc
ttcatctacaccaccagcaaccacatcaaatacgccgtcaccacaggggatcatggaatc
atccgtactctggacctgcctatttatgtcacccgcgtgaaggggaacaacgtgtactgt
ctagacagggaatgccgacccagggtcctcaccatcgaccccacagagttcaagttcaag
ctggcgctgatcaacaggaagtatgatgaggtgttgcacatggtgaggaacgccaagctg
gtgggccagtccatcatcgcctacctgcagaagaagggctaccccgaggtggcactgcat
ttcgtaaaggacgagaagacccggttcagcctggcactggagtgcggcaatatcgagatc
gccctggaggcagccaaggctctggatgacaagaattgctgggagaagctgggggaggtg
gccttgctgcagggaaaccatcagatcgtggagatgtgctaccagcgcaccaagaacttc
gacaggctctccttcctgtacctcatcacgggcaatctggaaaagctccgcaagatgatg
aagatagctgagatccgtaaagacatgagtggccactatcagaacgccctgtacctcgga
gatgtggcagagagggtgaggatcctgaagaactgcgggcagaagtccctggcctatctc
acagctgcaacccatggcttggatgaagaagccgagagtctgaaggagacgtttgaccca
gaaaaggaaacgattccagacattgaccccaatgcaaagctgctccagccccctgccgcc
atcatgcctctggacactaactggccgttgctcactgtctccaagggattctttgaagga
acaattgctagcaaaggcaaaggaggggccttggctgctgatattgatattgacacggtt
ggcaccgaaggctggggagaggacgctgagttgcagctggatgaagatggctttgtggat
gccggggaaggctttggagacgaaacccttggtaaaggacaggaggaaggaggcggatgg
gaagttgaagaggatttggaccttccccctgaactggatgtccctgctggcccggcagga
ggagccgaggatggattctttgtgccacccaccaagggcaccagcccagctcaggtctgg
tgtaacaattcccaactgcctgttgatcacatcctggggggttcctttgagacagccatg
cggctcctccacgaccaggtgggagtgactacttttggcccctacaagcagctgttcctg
caaacctatgcccggggccgaaccacctaccaagcacttccctgcctccccgccatgtat
ggatatccacatcgtaactggaaggacgccgggttgaagaatgccctcccggttgtcggc
ctgaagctcaacgacctgatccagcgcctgcaagtctgctaccagctcaccacggctggc
aagttcgaggaggcggtggagaagttccgcgccatcctgctgagcgtgccgctgctggtg
gtggataacaagcaggagatcgccgaggcccagcagctgatcgccatctgccgagagtac
atcgtggggctgtcgatggagatcgagaggaagaagctccccaaagagaccctggagcag
cagaaacgcacctgtgagatggcagcctacttcacccactccaacctgcagcccgtccac
atgatccttgtgctgcgcaccgccctcaatctcttctttaagctcaaaaacttcaagaca
gccgccaccttcgctcgccggctgctggagctgggccccaagcccgaagtgtcacagcag
acacgcaagatcctgtccgcctgcgagaagaaccccaccgacacctaccagctcaactac
gacatgcacaaccccttcgacatctgcgccgcctcctaccggcccatctaccgcggcaag
ccggtggagaagtgcccgctcagcggcgcctgctactgccccgagttccggggacagatc
tgccgagtcaccacggtgacagagatcggcaaagacgtcattgggctgcgaatcagccca
ctccagttccgctaa

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