Trachemys scripta elegans (red-eared slider): 117870569
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Entry
117870569 CDS
T07347
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03022
Basal transcription factors
tst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117870569
09124 Replication and repair
03420 Nucleotide excision repair
117870569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117870569
03400 DNA repair and recombination proteins [BR:
tst03400
]
117870569
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117870569
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117870569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
fvmJAB_N
Motif
Other DBs
NCBI-GeneID:
117870569
NCBI-ProteinID:
XP_034613652
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MDSVMKLQRVQLKCKNLHEFLRGLSPGILDRLYNHPATCLAVFRELPGLAKNYVMRMLFL
EQPLPQAAVALWVKKEYVKEQEESSDVLLGLRLWHTQLLPGGLQGLVLNPIFKENLRIAL
LGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVILHFMVGSPSAAVSQDLAQLLSQA
GLMKSSEPGEPPCITSAGFQFLLLDTSSQLWYFMLQYLQSAETRGMDLVEILSFLFQLSF
STLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGISGTTTDTH
NQGFVVVETNYRVYAYTDSELQIALIALFSEMQYRFPNLVVAHVTRESVQQAIANGITAE
QIIHFLRTRAHPVMLRQTPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLR
NHARDLGVLVFENPAKRLMVVTPAGHSDVKRFWKRQKQSS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggactccgtgatgaagctgcagagggtgcagctgaaatgcaagaacctgcacgaattc
ctgcgggggctgagcccgggcatcctggatcggctctacaaccaccccgccacctgcctg
gctgtgttccgtgagctgccgggattggccaagaactatgtgatgcggatgctcttcctg
gagcagcccctcccccaggctgctgtggcattgtgggtaaagaaggaatacgtcaaggag
caggaggagagctccgacgtgctgctggggctgcggctctggcacacccagctgctgccg
gggggtctgcaggggctggtcctgaaccccatcttcaaggagaacctgcgcatcgccttg
ctgggcgggggcaaggcctggtccgatgacaccagccagctggggccagacaagcacgcg
cgggatgtcccgtcgctggataaatatgccgaggagagatgggaggtaatcctgcatttc
atggtgggctcccccagcgccgcggtcagccaggatctcgcccagctcctcagccaagcc
gggctgatgaagagcagcgaacccggagagcccccctgcatcacctccgccggcttccag
ttcctgctgctggacacgtcctcccagctctggtacttcatgctgcagtacctgcagtcc
gctgagacccggggcatggacctagtggagatcctgtccttcctcttccagctcagcttc
tccacccttggcaaggattactcggtggagggaatgagtgactcgctgctcaattttctt
caacaccttcgggaatttggtctggtcttccagaggaagaggaagtcgcggcgctattac
cccacccgcctggccattaacttgtcctcaggaatctccggcaccaccacggacacccac
aaccagggcttcgtcgtcgtagagaccaattacagggtctatgcgtacacagactcggag
ctgcagatcgcgctcatcgcactgttctctgagatgcagtatcgcttccccaacctggtg
gtggcccacgtgacccgcgagagcgtccagcaggccatcgccaacggcatcacggccgag
cagatcatccacttcctacggaccagggcacaccctgtgatgctgagacagaccccagtg
ctgcctccgaccatcacggatcagatccggctctgggagctggagcgcgaccggctgcgc
ttctccgagggcgtgctgtacaaccagttcctgtcccaggtggactttgagctgctgcgg
aaccacgcccgggacctgggcgtgctggtcttcgagaaccccgccaagcgcctcatggtg
gtgacgcccgctggccactccgacgtcaagcgcttctggaagaggcagaagcagagctcc
tga
DBGET
integrated database retrieval system
