Trachemys scripta elegans (red-eared slider): 117870789
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Entry
117870789 CDS
T07347
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117870789 (SOX1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117870789 (SOX1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117870789
NCBI-ProteinID:
XP_034614035
LinkDB
All DBs
Position
1:complement(239479494..239484021)
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AA seq
366 aa
AA seq
DB search
MYSMMMETDLHSPGGAQGPTNLTGQTGAGGGGGGGGNKANQDRVKRPMNAFMVWSRGQRR
KMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK
TLLKKDKYSLAGGLLSAGSAGGGPAGVGVGMGVGMSPAGVGQRLESPGGTASGGYAHMNG
WANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGSGGHPHHPHPHHPHPHNPQPMHRYDMSA
LQYSPISNSQGYMSASPSGYGAISYGAQPHQNSAAAAAAAAAAAAASSGALGALGSLVKS
EPSVSPPVTSHSRAPCPGDLREMISMYLPAGEGGDPAAAQSRLHSLPQHYQSASTGVNGT
VPLTHI
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggaaacggacttgcactcccccggcggagcccagggccccact
aacctaacgggccagaccggagcaggaggaggcggcggcggcggtgggaacaaagcgaac
caagaccgggtcaagagacccatgaacgccttcatggtgtggtcccggggccagcgccgg
aagatggcccaggagaaccccaaaatgcacaactcggagatcagcaagcgcctgggggcc
gagtggaaagtcatgtccgaggccgagaaaagacccttcatcgacgaagcgaagcggctt
cgggcgctgcacatgaaggagcatccggattataaataccggccccgcaggaagaccaag
accctgctcaagaaggacaagtactcgctggccggggggctgctcagcgccggctcggca
gggggaggccccgccggggtcggggtgggcatgggagtcgggatgagccccgccggggtc
ggccagcggctggagagtcccggcggcacggccagcggggggtacgcgcacatgaacggc
tgggccaacggcgcctacccgggctcggtggcggcggcggcggcggcggccgcgatgatg
caggaggcgcagctcgcctacgggcagcacccgggcagcggcgggcacccgcaccacccg
cacccgcaccatccgcatccgcacaacccgcagcccatgcaccgctacgacatgagtgcg
ctgcagtacagccccatctccaactcgcagggctacatgagcgcctcgccctcgggctac
ggggccatctcctacggcgcccagccccaccagaactcggccgcggcggccgcggcggcc
gctgccgcggcggcggcttcctccggagctctgggcgccttgggctcgctggtcaagtcg
gagcccagcgtgagcccgcctgtcacctcgcactcacgggctccgtgccccggggacctg
agggagatgatcagtatgtacttaccggccggagaaggaggggacccggctgcggcgcag
agccggcttcactccctgccccagcattaccagagcgccagcacgggggtcaatggcacg
gtccccttgacacatatctga
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integrated database retrieval system
