Trachemys scripta elegans (red-eared slider): 117870802
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Entry
117870802 CDS
T07347
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04382
Cornified envelope formation
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117870802 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117870802 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117870802 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117870802 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117870802 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117870802 (COL4A2)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117870802 (COL4A2)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117870802 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117870802
NCBI-ProteinID:
XP_034614060
LinkDB
All DBs
Position
1:complement(240796783..241022199)
Genome browser
AA seq
1719 aa
AA seq
DB search
MRSSRSLLSCRALWQAMQVVLLLVLTSLLTGRVKAGGKSYTGPCGGRDCSRGCECFPEKG
GRGQPGLLGPQGFSGPPGLMGSPGLEGHKGHKGERGRPGVTGPKGEVGQTGVTGFHGADG
VPGHPGQSGSRGKPGHDGCNGTRGDAGEKGSQGPSGQPGSFGIQGPKGQKGEPFVMTPEL
ASKFRGEPGEQGLLGFPGPQGARGVVGLIGPTGNPGKPGPKGPPGFPGPQGNRGVSFYGE
RGEKGEKGLPGPPGLLATLEASNFSDIMLTKYKGTKGVKGETGERGTQGSPAYWAEKGEE
GIIGFPGQRGLPGINGIPGTAGEKGFQGFDGMPGSSGPKGMKGEQGERGFQGPPVYTPFA
RKGVTGDPGLPGVPGLAGDPGYQGDPGLPGLPGSSDGFPDGSERRGLRGETGAKGFRGEP
GFPATQPGPPGSDGKPGLQGFHGPPGPPGTAGYLFGLKGRQGDPGEAGSQGFPGFRGQKG
LKGETGDCKCIESEEARRGPAGLPGPPGFPGPTGLPGRKGDVGDQGQHGLPGFSGENGIR
GAVGLPGPKGEKGDSRYVTTKGTKGDPGGPGLSGIKGEDGFPGKDGIDGLPGLPGLPGDG
VRGSPGDPGYPGLQGEKGFLGEIGLPGAGLPGPKGYRGPPGDFGTYGNPGIQGPPGPPGA
PAQLDCNQITEDLSRGDGIETIWSGAECVRAPKGSPGKPGLPGAIGVKGAKGNAGEPGLD
GFQGRKGSQGDPGREGLPGPRGFTGPRGDGGPPGLPGLPGNPGSAGKPGAPGPIGPKGIA
GEVLGAAPGTPGDFGPSGFPGLKGLQGDHGVPGIRGAGGTPGLSGPKGQQGPSGPLGLPG
LPGPPGLHGFPGLPGQQGPLGRTGSPGFVGSLGARGDQGDQGFPGPVGMKGLAGDKGELG
NKGVQGTPGVPGLPGLDGMPGFPGLKGAKGSHGIGGFKGMLGQKGKPGLKGLKGEIGAFG
YLGSKGLQGEPGHKGDRGDRGPAGRPAEIMPSMLFEVKGDKGAIGDPGLKGDLGFKGSKG
MPGLPGKPGVPGLPGSTSHIEGEKGDAGIKGVTGVQGYPGTIGPPGIRGFPGTTGIRGEK
GTEGIRGDYGRPGSAGQTGDQGDTINLPGSTGLKGEAGVTGSLGVKGTRGDTGEVGDPGF
IGIEGLKGTQGFPGLKGQTGFPGLVGPPGSQGDPGLPGFQGEKGSRGWPGFVGQAGLPGF
RGISGLDGLPGTKGLPGSPGPDAYGTEGFPGIYGDKGEAGEPNTIEGTRGAPGQKGERGN
PGERGPIGDPGSHGIPGFPGVSNISGIPGDVGSPGLDGVPGYPGPRGRPGISAPAGSKGE
DGQIGVLGEDGQKGTGGDPGPQGRPGISGYPGAKGHKGAQGLMGTLGLVGAFGDTGPTGP
KGDRGPTGFQGPPGSPGPPAVPPKLVTHQGTAGPRGNMGPQGIPGEMGPHGPPGDPGFRG
PPGKPGFQGRGGMSALPGFRGDQGPSGFPGLAGFEGEPGRPGNPGIPGMPGRSVNIGYLL
VKHSQSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG
DVCYYANRNDKSYWLSTTASLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQDVSIPHC
PEGWRSLWIGYSFLMHTGAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKY
SFWLTTINEQFQSLPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgagaagctcgcggtccctcctctcatgtcgtgccctttggcaggctatgcaggtcgtg
ctgctcttggtgttgacctcgctgttaactggcagagtaaaagctggtggaaaatcttac
acaggaccatgtggaggaagagactgtagtaggggatgtgaatgtttccctgaaaaagga
ggccgtggtcaaccaggactacttggacctcagggattctctggaccaccaggattaatg
ggtagcccaggtttagaaggtcacaaaggtcacaaaggtgaaagagggcgacctggagta
actggaccaaaaggagaagtggggcaaacaggagtaactggtttccatggtgcagatggt
gttcctggtcatcctgggcagtcaggatcaagggggaaaccaggtcatgatggctgcaac
gggaccagaggtgatgctggtgaaaaaggaagtcaggggcccagcggtcaacctggttcc
tttggaatccaaggaccaaaaggtcagaagggggaaccttttgtaatgactcctgagcta
gcaagcaaattcaggggagagcctggtgagcagggattgttgggctttccaggacctcaa
ggtgctcgtggtgttgtgggtttaattggtccaacaggaaatccaggaaaaccaggacca
aaagggccaccgggtttcccaggaccacaaggcaacaggggcgtgagtttttatggagaa
agaggtgaaaagggtgaaaaaggtctaccgggccctcccgggcttctagctacacttgag
gcgagcaatttctcagacataatgctaacaaaatacaagggtacaaagggagtaaaagga
gaaacaggagaacgtggaactcaaggctcacccgcatattgggcagaaaaaggagaagaa
ggaataataggttttccaggacaaagggggttacctggtatcaatggcatcccaggaact
gccggggaaaaaggttttcaaggatttgatggcatgccaggcagcagtggtcctaaagga
atgaagggagagcagggtgagagagggtttcaaggaccacctgtttatactccgtttgca
aggaaaggagtaacaggtgatccaggattgccaggtgttcctgggcttgcaggagaccca
gggtaccaaggagatcccggccttcctggtcttcctggatcgtcagatggttttcctgat
ggctctgaaagaagaggtttacgtggagaaacgggtgccaaaggttttaggggagaacca
ggttttccagcaactcagccaggcccaccaggtagtgatggtaaaccaggacttcaagga
ttccatggcccacctggtcctccaggaactgcaggctatctttttggactgaagggacgc
cagggggatccaggtgaggcaggcagccaaggtttccctgggttccgaggacaaaaagga
ttgaaaggtgaaacaggggactgtaaatgtattgaaagtgaggaagccagacggggtcct
gctggtctacccggtccgccaggttttccaggcccaactggacttcctggacggaaagga
gatgttggagatcaaggtcagcatggtcttccaggtttctctggtgaaaatggaattcgt
ggtgcagttggattgcctgggccaaaaggggagaaaggagattctagatatgttacaacg
aaaggtaccaaaggagaccctggaggtcctggactatctggcattaaaggtgaagatggg
tttccaggaaaagatggtatagatggcttaccagggcttcctggccttccaggtgatggt
gtaagaggttcaccaggtgaccctggttatccaggactacaaggtgaaaagggctttctc
ggagagattggtctgccaggtgcaggcttacctggcccgaaaggataccgtggccctcca
ggtgactttggaacatatggaaatccagggattcaaggtcccccaggtcctccaggtgct
cctgcccaattagactgtaaccaaattactgaagatctttctaggggagatggcatcgag
acaatttggtcaggggcagaatgcgtgagagcaccgaaaggatccccaggaaagccagga
ttgccaggagctataggtgtaaaaggtgctaaagggaatgcaggtgaaccaggtctcgat
ggattccaagggcgaaaaggttcacaaggtgatccaggtcgtgaaggattaccaggtcct
cgaggttttactggaccccggggagatggaggcccaccaggtctaccagggctaccgggg
aatccaggcagtgcaggaaaaccaggtgccccagggcctataggaccaaaaggaattgca
ggtgaagttttaggagcagcaccaggcaccccaggggattttggaccatctggattccca
ggattgaaaggcctacaaggagatcacggagtaccaggaattagaggagctggtggtact
ccaggtttgtcaggacccaaaggacagcaaggaccctcaggtcctcttggtttgcctggc
ctgccaggaccaccaggattgcatggattcccagggcttccaggacagcaaggacctctt
ggcagaactggctcaccaggatttgttggttcacttggtgccaggggagatcaaggtgac
caaggttttcctggtccagtgggcatgaaaggtctggccggtgacaaaggtgaactcggt
aacaaaggagtacaaggaacacctggggtacctggtctcccgggattagacggaatgcct
ggttttccagggttaaaaggtgctaaaggttcacatggtattggaggtttcaaaggtatg
ttaggccagaaaggaaaaccaggattgaaaggactcaaaggcgaaatcggcgcttttggc
tatctgggttctaaaggtctgcagggggaaccaggccataaaggtgaccgtggagaccgg
ggtccagcaggaagaccagcagagatcatgccaagcatgctgtttgaggtcaaaggtgat
aaaggagctataggagaccctggcctaaaaggagatttaggctttaaaggtagtaaagga
atgccaggcttacctggcaaaccaggagttccaggtttgcctggatcaactagtcacatt
gaaggtgagaaaggagatgctggtattaaaggagtgacaggtgttcaggggtatcctggt
acaattggacctcctggcatacgaggtttccctggaaccactggaatcaggggtgaaaag
ggtactgaaggaatcagaggtgattatggtagacctggctctgctgggcaaactggtgat
caaggcgatactataaacttaccaggaagcacaggtctgaaaggagaagctggtgtaact
ggatcattgggtgtgaaaggaaccagaggagatacaggtgaagttggtgatcctggtttt
attggcattgaaggcctaaaaggcacccaaggttttccaggtttaaaagggcaaacaggc
ttcccagggttggttggaccaccaggatcacagggagacccaggtcttcctggatttcaa
ggtgaaaaaggaagtcgtggatggcctggtttcgtgggacaagcaggtttacccggcttc
cgaggaatcagtggattggatggtttgccaggcactaagggcttgccaggctccccaggt
ccagatgcatatgggactgaaggtttcccaggtatttatggtgacaaaggggaagcaggc
gaaccgaacactattgaaggcaccagaggagcgccaggtcagaaaggagagagaggcaat
ccaggggaacgaggcccaattggtgacccagggtctcatggaattccaggctttcctgga
gtttcaaacatatcaggaatacctggtgatgtgggttctccaggtctagatggagtgcca
ggctatccaggaccacggggcagacctggaatttcagctccagcaggaagcaaaggagaa
gatggtcaaataggtgtgcttggagaagatggtcaaaaaggaactggaggtgaccctgga
ccacaagggagacctggaatttcagggtacccaggagcaaaagggcataaaggcgcacaa
ggtctcatgggtactcttggcttagtgggagcttttggtgatacagggcccactggaccc
aagggggacagaggacctactggttttcaaggacctccaggttctcctgggccacctgca
gtcccccctaagctggtcactcaccagggtacagcaggcccacgtggaaatatgggtccc
caaggaatacctggtgagatggggccccacggtccaccaggtgatccaggttttagaggc
ccaccaggtaaaccagggtttcaaggaagaggtggcatgtcagctcttccaggttttaga
ggagatcaaggaccatcaggttttccaggtctagcaggctttgagggtgaaccaggccgt
ccaggtaaccctgggataccaggtatgccaggtcgcagtgttaacattgggtaccttctg
gtgaagcatagccagtctgagcaagagccaatgtgcccagttggtatgaataaactttgg
agtggctacagtctactgtattttgaaggacaggaaaaagcacataaccaggaccttggg
ctggctggatcctgtttggctcgttttagtaccatgcctttcctctactgtaaccccggg
gacgtctgttattatgcaaaccgaaatgataaatcctactggctctcaacgacagcatct
cttccaatgatgcctgtggcagaagaagaaattagaccatatatcagtcgttgttccgtc
tgtgaagccccagctgttgcaattgctgtccatagtcaagatgtttctattccacactgt
cctgaagggtggcgcagtttatggattggatattccttcctcatgcacactggagctggt
gatgaaggcggaggacagtcactggtttctcctgggagctgtctggaagacttcagagcg
actcctttcattgaatgcaatggcgcccgaggaacctgccactactatgcaaacaagtat
agcttctggcttaccactattaacgagcaattccagagcttgccctcagcagatacactc
aaggcaggtctcatccgaactcatatcagcagatgtcaagtctgcatgaaaaatttgtaa
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integrated database retrieval system
