Trachemys scripta elegans (red-eared slider): 117870904
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Entry
117870904 CDS
T07347
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117870904 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tst01009
]
117870904 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117870904 (PCDH9)
Protein phosphatases and associated proteins [BR:
tst01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117870904 (PCDH9)
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Protocadherins
117870904 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
MAP17
V_ATPase_I
RCR
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
117870904
NCBI-ProteinID:
XP_034614265
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Position
1:274079312..274965722
Genome browser
AA seq
1225 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTST
SLVYRLVSKAGDAPLVKVSSTTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDIGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADVGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVSVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAIDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPALTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPTTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQALNFGDMP
KYLWEIWVPDKPWVSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDE
FYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLGPYQ
QPKSPLSTFAPQKEWVKKDKLVNGHTLTRTWKEDSNRNQFSDRKQYGSGEGHFNTGNHMT
DIPLANLKSYKQASGPAESPKEHQL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattca
gctatagctcaagaacttatttacactattagagaggagctgcctgaaaatgtacccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacagggaccagcacc
agccttgtctacagactggtttctaaagcaggggatgcccctttggtcaaagtgtccagc
accaccggggaaatcttcaccacctctaatagaatagatagagaaaaactctgtgctgga
gcctcctatgctgaagaaaatgagtgtttttttgaacttgaagtggtgattctccccaat
gacttttttaggctgatcaaaataaaaatcattgtaaaagataccaatgacaatgcacct
atgtttccatcccctgtcatcaatatttccatacctgaaaacacgttgatcaacagccgc
tttccaattccatcagcaactgatccggacattggtttcaacggtgtacagcactatgaa
ctgttaaatgggcagagtgtctttggattggatattgtagaaactccggaaggagagaaa
tggcctcaactgatcgtacagcaaaacttggatagagagcagaaggacacctatgtgatg
aaaatcaaagtagaggatggaggaacccctcagaaatccagcacagccatactgcaagtc
acagtaagtgatgtcaatgataacaggccagttttcaaagagagtcaggtggaggttcac
ataccagagaatgccccagtaggcacctctgtaattcagcttcatgctacagatgcagat
gtaggaagcaatgcagaaatcagatatatttttggtgcccaagttgcccctgcaaccaaa
aggctctttgctttaaataacacaacagggctgattacagtgcagaggtccttagatcga
gaagagactgctattcacaaagtgacagtgctggccagtgacggtagctctactcctgct
cgggcaactgttaccatcaacgtcactgatgtaaatgataaccctcctaacatagacctc
aggtacattataagtcccatcaatggcacagtatacttatctgagaaagatcctgtcaat
acaaagattgccctaattacagtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaggtcccatttcacttgaaggcagtttacgacaaccagtatttg
ttagagacctcttccttgttggactatgagggcaccaaagaattcagctttaaaattgtt
gcctctgattctggcaagcccagtttgaaccagactgccctggtaagagttaaactggag
gatgaaaatgacaaccctccaattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccgtcgtggtctatacttaacaactattagtgccacagacgaagacagtgggaaa
aatgcagacattgtttatcagctaggccctaatgcctcctttttcgatctggatcgaaag
acgggagttttgacagcctccagagtttttgacagagaagagcaagaacgtttcattttc
actgtaacagcaagggacaacggcacccctcctctgcagagtcaagcggctgtaattgtt
agtgtgctggatgaaaatgacaacagtcccaaatttactcataatcactttcagtttttt
gtatctgagaacttaccaaagtatagcactgtgggagtgatcacagtgaccgatgcagat
gcaggggaaaataaagcagtgaccctttccatcctgaatgataatgagaactttgtgctg
gatccttactctggagttataaagtccaatgtttcttttgatcgagaacagcagagctcg
tacacctttgacgtcaaggccattgatggaggacaacctcctcgctcttctacagcgaaa
gtaacaataaatgtcatggacgttaatgataatagcccagttgtcatctacccaccttct
aatacttcttttaagttggtgccactctcagcaatcccaggctctgtcgtagcagaagta
ttcgctgtggatatagacactggaatgaatgctgaacttaaatatacaattgtaagtgga
aataacaaaggtttatttcgtattgatccagtgacaggtaatattactctggaagaaaaa
ccagctcttaccgatgtggggctgcatcgtttagtggtcaacataagtgacttgggttat
cctaaatccttgcatactcttgtgcttgtatttttgtatgtaaatgacactgctggaaat
gcctcttatatttatgacttgatacgtaggactatggaaacacccttggaccggaacata
ggggacagtagccaaccctatcaaaatgaggactatcttactatcatgattgctatagtg
gcaggtgctatggttgtgatagtggtgatatttgtcacggttctggttcgctgtcgacat
gcatctaggttcaaagcggcacaaaggagcaagcaaggtgctgaatggatgtctcccaat
caggagaacaaacagaacaagaaaaagaaaaggaagaaaaggaagtctcctaaaagttct
cttttgaactttgttaccattgaggagtcgaaacctgatgatgctgttcatgaacctatc
aacgggacaataagccttccagctgagctggaggagcaaagtataggaagatttgactgg
ggcacagcaccaccaacaacctttaagcctaacagtcctgatcttgctaagcattacaaa
tctgcctctccacagtctgcttttcatcttaaacctgacactccagtatcagtgaaaaag
catcatgtgattcaggaacttccgttggacaacacctttgttggtggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacaggcactgaattttggagatatgccg
aagtacttgtgggagatttgggtacctgacaaaccatgggtgtcccagcgccgtgttacg
tttcacctccctgatggctcccaggaaagctgcagtgacagtggtctaggagaccatgag
cctgtgggtagtggaaccctgatctcacaccctctccctctggttcagccacaggacgaa
ttctacgaccaggcctctccggacaagaggactgaagctgatggcaactctgaccccaac
tctgatgggcctcttggtccacgaggattagctgaagctacagagatgtgtactcaagaa
tgcctggttttgggtcactccgataactgttggatgcctcccagcctgggtccataccag
cagccaaagtctcctctctccacctttgcacctcagaaagaatgggttaagaaggacaaa
ctagtgaatggacacacgttgacaagaacctggaaagaagatagcaacagaaaccagttc
agtgacagaaagcagtatggttctggtgagggccatttcaacactggcaatcacatgact
gacattcctttggctaacttgaagtcttataaacaggcctcaggacctgctgagagtcca
aaggagcaccagctataa
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integrated database retrieval system
