Trachemys scripta elegans (red-eared slider): 117871081
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Entry
117871081 CDS
T07347
Symbol
PAN3
Name
(RefSeq) LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117871081 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117871081 (PAN3)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117871081 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
117871081 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_CK
zf-CCCH
Pkinase
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
117871081
NCBI-ProteinID:
XP_034614587
LinkDB
All DBs
Position
1:complement(301554062..301668558)
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AA seq
879 aa
AA seq
DB search
MNSGGLPSPAGPSPVAGAPAGVGAVGVPVPAPGAGLKLKFCRYYAKDKTCFYGEECQFLH
EEPGAAPACPGPPPALGGLPLGLPGPSVPAAGPGYPHGAAPGAAAAVGPKKAELGGSHGA
GGGGGGGGLDGPRLAIPGIDGGGLADAGLTDSYFSTSFIGVNGFGSPAEAKYPMMQRMTN
SSSSPSLLNDSAKQYAGHDPLTSPASSLFNDFAALSLSQRRKPRKYRLGMLEERIVPVGS
KARKSKNAIGCLADRCKTGVPINMVWWNRVTENNFQTPNPTASEFIPKGGSTSRLNNVSQ
SSMSAFSQALFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPA
NYMVPTSASTPVTNAVSQPPSTGQVIQKETVGGTTYFYTDTTPAPLTGMVFPNYHIYPPT
APHVAYMQPKANAPSFFMTDELRQELINRHLITMAQIDQADIPAVPTEVDSYHSLFPLEP
LXPPNRIQKTSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSN
IVTLREVFTTKAFGEHSLVFAYDFHAGGETMMSRHFNDPSADAYFTKRKWGQHDGPLPRQ
HAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILVTGKTRLRVNCVGVFDVLTF
DNSQNNPLALMAQFQQADLISLGKVVLALACNSLSGIQRENLQKAMELVTINYSSDLKNL
ILYLLTDQNRLRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLG
TINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIISCLNKLDAGVPE
KISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcggcggcctcccgtccccggcgggcccgtccccggtggcgggggccccggcg
ggggtcggggcggtgggggtcccggtcccggcccccggcgcggggctgaagctgaagttt
tgccgctactacgccaaggacaagacctgtttctacggggaggagtgccagttcctgcat
gaggagcccggcgccgcccccgcttgccccgggcccccgcccgccctcggggggctcccg
ctcggcctgcccggccccagcgtccccgccgccgggcccggctacccgcacggggcagcc
cccggagcggcggcggcggtggggcctaagaaggccgagctggggggcagccacggcgcc
ggcggaggaggaggcggcggggggctggatggaccgcggctggcgattcctggaatagat
ggcggtggtttagctgatgctggtctcacagattcctactttagtaccagcttcattggt
gttaatggatttggaagtcctgctgaagcaaaatatcccatgatgcagaggatgacaaat
agcagcagttcccctagccttctcaatgacagtgccaagcagtatgcaggccatgaccca
ctgacttcaccggcttcatccttgtttaatgactttgctgccctcagtttatctcaaagg
agaaagccaaggaagtatcgactggggatgctggaggagaggatagttccggtgggatca
aaggcacgaaaatcaaagaacgctattggctgtctggctgacaggtgtaaaacaggagta
cccatcaatatggtttggtggaacagagtcacagaaaacaattttcagaccccaaatcct
actgcaagtgagtttattccgaaaggaggatcaacttccaggctgaataatgtttctcag
tcaagtatgtctgccttctctcaagccttgttctctcacccttccatgggaagtcctgct
actgctggactagctccaggaatgtcactgtctgcaggatcttctcctcttcactcccct
aaaattactcctcacacatctcctgctcctagaagaagaagtcatactccaaacccagca
aattatatggtgcctactagtgcctctactcctgttactaatgctgtctcccaacctcca
tctactggccaggtgattcagaaggaaactgtgggtggaacaacatatttctacactgat
acaactccagcccctctcacaggaatggtatttccaaactatcacatttaccctcccact
gcacctcatgttgcttatatgcagccaaaagcaaatgcaccttccttcttcatgacagat
gaactcagacaggagctgatcaaccgacatttaataacaatggctcaaattgatcaagca
gatatccctgcagtccctacagaagttgacagctaccacagccttttccctttagaaccc
ctgncaccacccaatcggatacagaaaacaagcaactttgggtacattacatcatgctac
aaagctgtaaatagcaaagatgatctgccatattgccttcggaggatacatggtttccgt
cttgttaacacaaagtgcatggtattggttgacatgtggaaaaaaattcaacactcaaat
attgtaactctgcgtgaagtgtttaccactaaagcatttggagaacattctcttgtgttt
gcatacgattttcatgctggaggagagactatgatgagcagacattttaatgaccctagt
gctgatgcctatttcactaaaaggaaatggggtcagcatgatgggcctctgccccggcag
catgctgggttattaccagagtctcttatttgggcatatattgtgcagctcagctctgca
ttgaggaccattcatacagcaggattagcatgtcgagttatggatccaacaaagattcta
gtaacgggcaaaacaaggttacgagtgaattgtgttggagtctttgatgttttaacattt
gataacagtcagaataatccactggcactaatggctcagtttcagcaagcagatctgatc
tcactaggaaaagttgtgttggcgttggcttgcaattctttgtcaggaattcaaagagaa
aatttgcagaaagctatggaactggtgacaatcaactattcctctgatctgaagaatctg
attttgtatttgctgactgaccagaataggcttcgcagtgtaaatgatatcatgcctatg
attggtgcacgattctatactcaactggatgctgctcaaatgagaaacgatgttatagag
gaagaccttgcaaaggaggtgcagaatggaaggttgtttaggcttctagcaaaattggga
acaatcaatgagagaccagaatttcagaaagacccaacttggtcagaaactggagaccga
tatctactgaagctctttcgggatcatcttttccatcaggtgacagaagcgggcactcct
tggattgacctcagtcacattatctcatgtcttaacaagttagatgctggtgtgccagaa
aaaataagcctcatttccagagacgagaagagtgtacttgtggtaacttacagcgattta
aaacgctgctttgaaaatacttttcaagaactaattgcagccgcaaatggtcagttgtag
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