Trachemys scripta elegans (red-eared slider): 117871359
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Entry
117871359 CDS
T07347
Symbol
NUP98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117871359 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117871359 (NUP98)
03036 Chromosome and associated proteins [BR:
tst03036
]
117871359 (NUP98)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117871359 (NUP98)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117871359 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
117871359
NCBI-ProteinID:
XP_034615158
LinkDB
All DBs
Position
1:complement(337878311..337933340)
Genome browser
AA seq
1819 aa
AA seq
DB search
MFNKSFGTPFGGSAGGFGTTTTFGQNAGFGTTSGGAFGTSAFGSNNNTGSLFGNTQTKPG
GLFGSSTFSQPATSSTSTGFGFGTSTGTSNSLFGTASTGGGLFSSQNNAFAQNKPAGFGN
FGTSTSSGGLFGTTNTASNPFGGTSGSLFGPTSFTAAPTGTTIKFNPPTGTDTMVKSGVS
TNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPSNPAVAAAGLFGSSTATSSAATGL
FGSSTTNAGFSYGQNKTAFGTSTTGFGTGTAGSLFGQQPQQTTSLFSKPFGQATTTQNTG
FSFGNTSTLGQPNTNTMGLFGATQASQSGSLFGTAANTNAATGFGTGTGTGLFGQANTGF
GVGGSTLFGKPAGFGTTTTSAPSFGTTTGSGLFGNKPTLTLGTNTNTSNFGFGASTAGNS
IFGNKPAAGTLGAGLGTGFGTALSAGQTSLFGNTQPKLGGTLGTGAFGAPGFNTSTATLG
FGAPQPAVALTDPNVSAAQQAALQQHFNSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNP
AAQKALTTPTHYKLTPRPATRVRPKALQTAGSSKSHLFDGLDDDEPSLSNGAFMPKKSIK
KLVLKNLNSSNLFSPVSREAEDLEPPSEYPENGERFNFLSRSVDENHRPEGEREEEDDHH
EVTRFYTNPIAKPIPQTPENAVHKHQNNVDDTIVALNMRVALRNGLEGSSEDASFHDESL
QDDRDEENENVYSPHPAGIVLTKAGYYTIPSMEDLAKLTTDRGECIVTDFTIGRKGYGSI
YFEGEVNLTNLNLDEIVHIRRKEVIVYPDDDQKPPIGEGLNRRAEVTLDGVWPTDKTSRC
LIKSPERLADINYEGRLEAVSRKQGAQFKEYRSETGSWVFKVAHFSKYGLQDSDEEEEEH
PSKVDAKKLKTAQVPPQGQLVPQQMALNGKPTPPSQSPEVEQLGRVVELDSDMADITQEP
AQDSILEDSITEEPELVPASTHIASSLGINPHVLQIMKASLLADEEDVDLILDHHFGKQP
TKMDTSQEICSPRLPISALQGQKRHSSVGGLLQSKLASVSFLQSASLQDFHGPRTSSLGN
PPSAASWSGLSPLPSAFSMPSAAPEVQLKTVGACRQQGLIPLEKSVTYGKGKLLMDMALF
MGRSFRVGWGPNWTLVNSGDKLSGSSEPEDLRNDSMEYGFLPTPVAPKSLSESPFKVHIE
KLTLERRKTDGDQQLYLIPLEIKLKHSTVHVDERCPLLAANPGVSAIHDYADWVRDFCGD
AAEIESVVKYWCLTWMLCEAIWGHLKELEASLEEPSEYIVTLERRKAFSRWLSQTAAARI
EEEVSLSQHENHIEAVFSYLTGKRISEACRVAQQSGDHRLALLLSQLVGSQQVRELLTMQ
LVDWHGLQADCFIQEERLRIFALLAGKPVWQLSERKSINVCSQLDWKRSIAIHLWYLLPP
TASISKALNMYEAAFQNTPECEKYACCPLPPYLEDSGCVLEEDDSTKRPLRDVCFHLLKL
YSDRCYDLNQLLDPRSITSDPLDYRLSWHLWEVLRALNYTHLSEQCQGVLNASYAAQLES
EGLWEWAIFVLLHTSNTHTREKAVREFLNRHCVLSETPESWTKETFLTQKLCIPPEWIHE
AKAVRARMEGDKHKEALYLFKAGHWNQCHKLVIKHLASDAIINENYNYLKGFLEDLSPPE
RSTLIQDWDTAGLVYLDYIRVIEMLDRIQQLDCSAYELERLHTKVTSLCNRIEQIQCHNA
KDRLAQSDMAKRVANLLRVVLSLQHSPEPASDSTPDVQRVPLRLLAPHIGRLPMPEDYAL
EELRSLTQSYLRELTVVTQ
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaatcatttggaactccgtttggaggcagcgctggtggctttgggactact
acaacatttggacaaaatgcaggctttggtactaccagtggaggagcatttggaacatca
gcctttgggtcaaacaataacacaggaagcctctttgggaacacacagactaaaccagga
ggattgtttggttcaagtacatttagccaaccagccacctcctccacaagcactggcttt
gggtttggaacatcaactggaacttccaacagcttgtttgggactgccagcactggtgga
ggtctcttttcatcccagaataatgcctttgctcagaataaaccggccgggtttggaaac
tttggaacaagtaccagcagtggcggtctctttggaaccactaacactgcctccaaccct
ttcgggggtacatctggctctctctttgggccaactagctttactgctgctccaactggg
actaccattaaatttaacccaccaaccggcacagatactatggtaaaatctggagttagc
actaacatcagcactaagcaccagtgtattactgctatgaaggagtatgaaagcaaatcc
ctagaggaactccgtttggaagattaccaggcaaacaggaaagggccctcaaatccagcg
gtagcagctgcagggttatttggatcctccacagctacatccagcgcagctactggactg
ttcggctcctccaccactaatgcaggtttttcatacggacagaataaaacggcttttgga
accagtacaactggctttggaacaggaacagccgggagcctttttggtcagcagcctcag
cagactaccagtctgttcagcaaaccatttggccaggccaccacaacgcagaacactggc
ttttcttttgggaacaccagcactcttggacagccaaatacaaacacgatgggtttattt
ggggcaacccaagcctcgcagtctggaagcctttttggaacagctgccaacacaaatgct
gccactggatttggaacgggaactggaactgggctctttggacaagccaacacaggattt
ggtgttggcggttcgacgctgtttggtaagcctgctggatttggaaccaccacgaccagt
gctccttcgtttggtacaactactggcagcgggctctttggtaacaaaccaaccctgact
ttaggaaccaatacaaacacttccaattttgggtttggtgcgagcactgctgggaatagt
atcttcggaaataaacctgcagctggaactctcggcgctggacttggaacaggatttgga
acagctcttagcgcagggcagacttcactattcggaaacacccagcctaaattaggtgga
acactgggaacaggagcatttggagcacctggattcaatacatcaacagccaccctgggc
tttggagctccccagcctgctgtggcattgacagacccaaatgtttcagccgcccaacaa
gcagccctccagcagcacttcaacagcttgacctactcaccctttggagattctcctctc
ttcagaaaccctatgtcagaccccaagaagaaagaagagagactgaaaccaactaatcca
gcagcccagaaggccttgactacgccaacccattacaaactgaccccgcgaccagcaacc
agagtgcgaccgaaagctttgcagacagcaggatcttccaaatctcacctctttgatggg
ctggatgatgatgagccatctctatccaatggtgcattcatgcccaagaagagcatcaag
aagctggttttgaaaaacctcaacagcagcaacttgttttctcctgtcagtcgtgaagct
gaagatctggaacctccatccgagtatccagagaatggagagcggttcaactttctatcc
agatctgttgatgagaaccacagaccggagggtgagcgagaggaagaggacgatcaccat
gaagtgactagattttacactaaccccattgccaagcccatcccacagaccccagagaat
gcagtgcacaaacaccagaataacgtggacgataccattgtggctctgaatatgcgggtt
gccttgcggaatggcctggaaggcagcagtgaagatgcttcatttcatgatgagtcactg
caggatgacagagacgaggagaatgagaatgtatatagtccgcacccagcaggaattgtt
ctaacaaaagctggctactacaccatcccgtctatggaggatctagctaaacttaccact
gacagaggagagtgtattgtgactgatttcactataggtcgtaaaggttatggatcgatt
tacttcgaaggagaggtaaatctaactaacttaaatctggatgagattgtgcacatccgc
aggaaagaagttattgtctatcctgacgatgatcagaagccacctattggtgaaggttta
aatagacgagctgaagttacattggatggagtttggccaacggataaaacatctcgctgc
ttgataaagagcccagaacgactagcagatatcaattatgaaggcagactggaggctgta
tctcggaagcagggagcccagttcaaagaataccgttcagagactggttcttgggtattc
aaggtggctcacttctctaaatacggcttgcaagattctgatgaggaagaggaggagcat
ccttcaaaagtggacgcaaagaagttaaaaactgcccaagtgccaccccaggggcagctg
gtgccccaacaaatggctctaaatggcaagccaacgcctccatctcagagcccagaagtg
gaacagctggggagggttgtggaactggacagtgatatggctgacatcacccaggaacca
gctcaggattcaatactagaagatagcattacagaagagccggaactggtgcctgcttca
acgcacattgcatcttcacttggtataaacccccatgtcttacagatcatgaaagcttcc
ttgctcgctgatgaagaggatgtagacttgatcctggatcatcactttggcaaacagcct
acaaaaatggatacttctcaagagatctgctctcccaggcttccaatttcagcattgcaa
ggacagaaaagacactcctcagttggagggctgctgcaatcaaaacttgcaagtgtgtct
ttcctccaaagtgcttctctgcaagattttcatggaccaagaacttcctctttaggcaat
cctccatctgcagcctcttggtctgggctttccccactaccctctgcattctccatgccc
agcgcagccccagaggtgcagctgaaaacagtgggtgcctgtaggcagcaggggctaata
cctctggaaaaatctgtcacttatggaaaaggaaaactcctaatggatatggcactcttc
atgggacgctcatttcgtgttggttggggacccaattggactcttgtaaatagtggagat
aaactgagtgggtcaagtgagcctgaggatcttcgcaatgactctatggaatatggattc
ttgccaactcctgttgctcctaaatcactttcagaatctcccttcaaggttcatatagag
aagctgaccttagaacgaaggaagacagacggagaccagcagttatacctcatccctctg
gagataaagctcaaacacagcactgtccatgtagacgaacgttgtcctctcttagcagcc
aacccaggagtgtctgccatccatgactatgctgactgggttagagacttttgtggagac
gcagctgaaatagaatctgtggtgaaatactggtgtttgacatggatgttgtgtgaggca
atctggggccacctgaaggagttagaagccagtttggaggagcccagtgagtacattgta
accctggagcgtaggaaagccttctcccgctggttatcacagactgcagcagcacgaatc
gaagaggaagtctcactgtcccagcacgagaaccacatagaggctgtgtttagctacctt
actgggaagaggatcagtgaggcttgtagggtggcacagcaatcaggagatcacaggctt
gcccttctcctctcccagttggtaggcagccagcaggttcgggagctcctcacaatgcaa
ttagtggactggcatggattgcaggcagactgcttcatccaggaggagagattgcgcatc
tttgctctgctggctgggaagcccgtgtggcagttatctgagagaaaaagcattaatgtg
tgctcacagctggactggaagcgttctattgctatccacctctggtatctgcttccgcca
acggcttctatttcgaaggcactcaacatgtacgaggcagcattccagaacaccccggag
tgtgagaaatatgcctgctgtcccctgcctccctacctagaggattctggctgtgtactt
gaggaagatgacagtacaaagagacccctgagagatgtctgctttcacttgttaaagctc
tacagcgacagatgctatgatctcaatcagctgcttgaccccagaagtattacttccgac
cccttggactaccgtcttagttggcacctgtgggaagtacttagagccttgaattacact
catctatcagagcagtgtcaaggagtgctgaatgccagctatgctgcccagcttgaaagt
gaaggactctgggaatgggccatttttgtactgttgcatacatccaatacacacacacgt
gagaaagcagtgcgtgaattcttaaaccgccactgcgtgctgtcggaaacgccagaatcc
tggacaaaggagactttcctgacacaaaagctctgcattccaccagaatggattcatgaa
gctaaggcagttcgggcaaggatggagggagataagcacaaagaggccctctacttgttc
aaagctggacactggaaccagtgtcacaaactggtcatcaagcacttagcctcagatgct
attattaatgaaaactacaactacctaaaaggattcctagaagatttgtcccctccagag
cgaagtacactcatccaggactgggacacagcggggctggtttatttggactacatccgg
gtcatcgaaatgctcgacaggattcagcagctggattgttctgcatatgagttggagagg
ttacataccaaagtgacgtcgctatgcaacaggatagaacagatacagtgccacaatgcc
aaggaccgattggctcagtctgatatggccaaacgtgttgctaacctgctgcgggtggtc
ctgagcctacagcattctcctgaacctgcctctgactccacgcccgatgtgcagcgagtc
ccacttcgcctgcttgctccccacattggccggcttcccatgccagaggactatgccttg
gaggagctgcgcagtctcacacagtcgtatctacgagaactgactgtggtgactcagtga
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integrated database retrieval system
