KEGG   Trachemys scripta elegans (red-eared slider): 117872002
Entry
117872002         CDS       T07347                                 
Symbol
WDR48
Name
(RefSeq) WD repeat-containing protein 48
  KO
K15361  WD repeat-containing protein 48
Organism
tst  Trachemys scripta elegans (red-eared slider)
Pathway
tst03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tst00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    117872002 (WDR48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tst03400]
    117872002 (WDR48)
DNA repair and recombination proteins [BR:tst03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     117872002 (WDR48)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IP5PC_F Beta-prop_DCAF4 WDR54 WD_LRWD1 Beta-prop_Vps41 WD40_RFWD3 RAWUL Beta-prop_NUP159_NUP214 WD40_like Nucleoporin_N Tfb2_C Beta-prop_VPS8
Other DBs
NCBI-GeneID: 117872002
NCBI-ProteinID: XP_034615824
LinkDB
Position
2:complement(12827614..12876846)
AA seq 677 aa
MAAHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEPFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPALWVATTKSSVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGG
ASIIQCHILNDKRRILTKDTNNNVAYWDVLKACKVEDLGKVDFEEEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHIN
PMDEEENEINHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQTTSSSNNEKAGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKST
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggcggcgcatcaccgacagaacgcggccgggcgccggaaagtgcaggtctcctatgtg
attagagatgaggtagagaagtataatcgaaatggtgtaaatgcactccagctggatcca
gcattaaacagactcttcacggcgggtcgcgactctataataaggatatggagtgtcaat
cagcacaagcaagacccttatatagcatctatggaacatcacactgattgggtaaacgat
attgtactttgttgcaatggtaaaacattgatatctgcttcttcagatactactgttaaa
gtgtggaatgcacataagggattttgcatgtcaacactaaggacacataaggattacgtg
aaagccttagcatatgcaaaagataaagaactggtagcatctgccgggctggacagacag
atattcctctgggatgtaaatactctaacagcactgactgcctcaaacaacactgtcaca
acttcttccctgagtgggaacaaagattccatttacagccttgcaatgaatcaaatggga
acagtaattgtatcagggtccactgaaaaggttttaagggtatgggatccaaggacttgt
gcaaagctgatgaaacttaaagggcacacggataatgtaaaagctttgttgttgaacaga
gatggcacacagtgtctttcaggcagctctgatggaactattcgtctatggtcccttggc
cagcagagatgtatagccacatatcgagtccacgatgaaggtgtttgggctctgcaggtc
aatgaacccttcactcatgtttattcaggaggaagagacagaaagatttattgcacagat
ttacgaaatcctgatatccgtgtgctcatctgtgaagaaaaggcaccagttcttaagatg
gaacttgatagatcagctgatcctcctccagctctttgggttgcaacaactaaatcttct
gtcaataagtggactttgaagggaattcataattttagagcttctggggactatgacaat
gactgtactaatcctataacacctctttgtacacagcctgaccaagttatcaaagggggt
gctagtattattcagtgccacattcttaatgacaagagacgtatattaaccaaagataca
aataataatgtggcatactgggatgtattgaaggcatgtaaagttgaagaccttgggaaa
gtagattttgaagaagaaattaagaagagatttaaaatggtgtatgtgccaaactggttc
tcagtagacttaaaaactgggatgttgacaattactttagatgagagtgactgctttgca
gcttgggtctcagcaaaagatgctgggtttagcagtccagatggatctgatccaaaattg
aatcttggagggcttctactacaagctcttctagagtattggcctagaacacacatcaat
ccaatggatgaagaggaaaatgaaataaatcatgtgaatggtgagcaggagaacagagta
cagaaaggaaatggatactttcaggtaccaccgcatacaccagttatctttggtgaagct
ggaggacgcactttgttcagattattatgtcgggattcaggtggtgaaactgaatctatg
ctgcttaatgaaactgtgccacaatgggtaattgacatcactgtggataaaaatatgccc
aaattcaataagattcccttctaccttcaacctcattcgtcttcaggggcaaaaacttta
aaaaaagatcgattgtcagctagtgacatgctgcaggtcagaaaagtgatggagcatgtt
tatgagaaaatcataaacctggataatgaatctcagacaactagctcctccaataatgaa
aaagctggagaacaagagaaagaggaggacattgctgtgttagcagaagaaaagattgaa
ctcttgtgccaggaccaggttttggatccaaatatggaccttcgaactgttaagcacttc
atatggaagagtggtggtgatctgacacttcactaccgacagaaatcaacgtga

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