Trachemys scripta elegans (red-eared slider): 117872034
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Entry
117872034 CDS
T07347
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117872034 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tst01002
]
117872034 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117872034 (SHH)
Peptidases and inhibitors [BR:
tst01002
]
Cysteine peptidases
Family C46: hedgehog family
117872034 (SHH)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Morphogens
117872034 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
VldE
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
117872034
NCBI-ProteinID:
XP_034615888
LinkDB
All DBs
Position
2:complement(18282293..18304299)
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AA seq
426 aa
AA seq
DB search
MDEMLLLTRILLVGFICVLLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKRVQDLSPGDRVLAADAQGRLLYSD
FLAFLDREHGAPKLFYVIETRQPRARLLLTAAHLLFVAPPHNHSQPEPEPARSRALFASR
VRPGQRVYVLGEGGRRLLPAAVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEH
SWAHWAFAPFRLAHALLAVLSPSASLPEAEPAPPGLHWYSRLLYRIGSWVLDSDSLHPLG
MAVQSS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctgttggtgggcttcatctgcgttcttttg
gtctcctctgggctgacttgtggaccaggcaggggtattggaaaaaggagacaccccaaa
aaactgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatctcaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacactggagctgacagactg
atgactcagagatgcaaagacaagctgaacgccctggctatctcggtgatgaaccagtgg
cccggagtaaagctgagggtgaccgagggatgggatgaagatgggcaccactccgaggag
tcgctgcattacgagggccgggccgtggacatcaccacctcggacagggaccgcagcaag
tacggcatgctggctcggctggcggtagaggctggcttcgactgggtctattacgagtcc
aaggcccacatccactgctccgtcaaagcagagaactcggtggccgccaagtcgggcggc
tgcttcccgggctcggccacggtgcacctggagcagggcggcacgaagcgggtgcaggac
ctgagccccggggaccgcgtgctggcggcggacgcgcagggccggctgctctacagcgac
ttcctggccttcctggaccgcgagcacggcgcccccaagctcttctacgtgatcgagacg
cggcagccgcgcgcccgcctgctgctcaccgccgcccacctgctcttcgtggcgcccccg
cacaaccactcccagcccgagcccgagcccgcccgcagccgcgccctcttcgccagccgc
gtgcggccgggccagcgggtctacgtgctgggcgagggcggccggcggctgctgcccgcc
gcggtgcacagcgtctccctgcgggaggaggcctcgggggcctacgccccgctcacggcc
cagggcaccatcctcatcaaccgggtgctggcctcctgctacgccgtcatcgaggagcac
agctgggcgcactgggccttcgcccccttccgcctggcccacgccctgctggccgtgctc
tcccccagcgccagcctgcccgaggcggagcccgcccccccgggcctccactggtactcg
cgcctcctctaccgcatcggcagctgggtgctggacagtgactccctgcacccgctgggc
atggccgtgcagtccagctga
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