Trachemys scripta elegans (red-eared slider): 117872218
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Entry
117872218 CDS
T07347
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117872218 (VPS50)
Membrane trafficking [BR:
tst04131
]
Protein recycling
Others
EARP complex
117872218 (VPS50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DcpS_C
Motif
Other DBs
NCBI-GeneID:
117872218
NCBI-ProteinID:
XP_034616336
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All DBs
Position
2:44664068..44834206
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AA seq
986 aa
AA seq
DB search
MQKIKSLMARQGLKSPQENVHDLSPVENFRIPSKEELRELREQPTDPQAQQEIINSIEEV
YFSNDSFDIVKYELEKLPPVLSLQEMEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNS
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDRDEGTVSSSV
SDGNNVIGAEETNFDRSYVQKKLEHGLSRIWQDVQLKVKTYLLGTDMSNFKYDDFIFVLD
IISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLEELRMFLENETWELCPVKSS
FSILQLHEFKFMEQSRSPSVSPSKQPASAISTTITLFEQYCNEGNPFEIQVNSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPVKSVSRETLRSRKRSDY
NLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DTPVQSSSLPTSSREQYSARQFESTGLGLSSNRLRTTLNRIQESLIDLEVSTDTTGTLTA
AEERKEKVPSPHLSHLVVLTSGNTLYGLAERVVATESLVFLAEQFEFLQSHLDAVMPAAK
KPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNVYVDA
LLKEFEQFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQ
LDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNV
CLGSHINKKARQKLLAAIDDLDRPKR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaagtcactgatggctcgccagggtctcaaaagtccacaggagaacgtt
catgacctcagtcctgttgagaattttcggattcctagcaaggaggagctgagagaactc
cgggaacaaccaaccgatcctcaagcccagcaagaaataattaacagcattgaagaagtg
tatttttccaatgattcctttgatattgtgaagtatgagttggagaagcttcctccagtt
cttagtctccaagaaatggaagaatacagagacaaattaaagcaacaacaagctgctgta
tctaaaaaggttgcagacttgattcttgaaaagcagcctgcatatgttaaggaacttgaa
cgagttacatctttacaaactggtcttcagttagctgcagtcatttgcacaaatggaaga
agacacctgaatattgcaaaggaaggctttactcaagctagtttgggacttcttgcaaat
caaagaaaacgacagttgctgattggactgctaaagtctctgagaacaataaaaacactg
caaagaactgatgtacgtttaagtgaaatgttggaggaggaggactatccaggagctatt
caattgtgcttggaatgccagaaagcagccagtactttcaaacactacagttgtataagt
gaattgaattcaaaactgcaagacactttggaacaaatagaggaacaattagatgtagcc
ctctccaaaatatgcaagaactttgatatcaatcattataccaaggtgcagcaggcttac
agactacttggaaagacacagacagcgatggaccaactacatatgcacttcactcaagcc
attcacaacacagtgtttcaagtagttcttgggtacgtagagctgtgcgcaggaaactcg
gacaccaaatttcagaagctacagtacaaggacctctgcacacatattacatcagacagc
tacattccatgtcttgctgacctctgcaaagcactctgggaagtcatgctcagttattat
cgaacaatggaatggcatgagaaacatgaccgagatgagggaactgtttcatcttctgtt
tcagatggcaacaatgtgattggagctgaggagactaattttgaccgtagctatgtacaa
aagaaattagaacatggactttcacgaatatggcaggatgtgcagctgaaagtgaaaacg
tatctgctgggaacagacatgtctaacttcaaatatgatgactttatctttgtactagat
atcattagcaggttgatgcaagttggggaagaattttgtggcagtaagtcagaagttttg
caagaatccattagaaaacaaagtgttaactatttcaagaattatcacagaactcgtctt
gaagaattgcgaatgttcttggagaacgagacctgggagctttgtcctgttaagtcaagc
tttagtattttacaacttcatgagtttaaattcatggagcagtcacgttccccgtctgtg
tcgcctagtaagcagcctgcttcagcaatctcaacaaccataactttgtttgagcaatat
tgtaatgaaggaaatccatttgaaattcaggtcaacagcaaagatgatgagacagaagat
gtacttgcttctaatgggtatgaatctgatgaacaggagaagagtgcctatcaagagtat
gacagtgacagtgatgttcctgaggagctgaaaagagattatgtggatgagcagacagga
gatgcccctgtaaaaagtgtttctcgagaaaccctgaggagcaggaagcgttcagattat
aatctcaacaaggtgaatgcacccatcctaacaaacactacactgaatgtaataagactc
gttgggaaatacatgcagatgatgaacattctgaaaccaattgcatttgatgtgattcac
ttcatgtctcagctgtttgattactatctgtatgcagtgtatacgttttttggccgaaat
gacacgcctgtacagagttcttcacttcccacatctagcagggaacagtacagtgctagg
cagtttgaatcaacaggactgggtcttagtagtaacaggctgcgcactacgctaaacagg
atacaggagagcctgattgatctggaggtctctactgataccactggcaccctcacagct
gctgaagagagaaaggagaaagtgccaagcccacacctcagtcatcttgtagttttaaca
tctggcaatactctgtatggtttggcagagagagtggtagccacagaatccttggtgttt
ttggctgagcagtttgagttccttcagtcgcatcttgatgctgtgatgcctgcagccaag
aaaccctttctccagcaattctactctcagacggtgtcaaccgccagtgaactacgcaaa
ccaatttattggattgtagctgctaaagctattgattatgaacagatgctgctcctcatg
gctaatgtgaagtgggatgtgaaagagatcatgtcacaacacaatgtctatgttgatgct
cttttaaaggaatttgaacagtttaacagaaggttgaatgaggtgtctaaaagagtccgt
attccattgccagtgtcaaatattctttgggagcattgtatacgactagccaatagaact
attgtggaaggttatgccaatgtcaagaagtgtagcaatgaagggcgtgccctgatgcaa
ttggacttccagcagtttttaatgaaactagaaaagctaacagacattagacctattccg
gataaggaattcgtggagacctacattaaagcttactatctgactgaaaatgacatggag
cgctggatcaaggagcacagggaatattccaccaagcagttgaccaatctggtgaatgtt
tgtctgggatcacacatcaacaaaaaagcaagacagaaactgctagcagcaattgatgac
ctagacagacctaaaagataa
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