Trachemys scripta elegans (red-eared slider): 117872438
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Entry
117872438 CDS
T07347
Symbol
NOD1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04621
NOD-like receptor signaling pathway
tst05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117872438 (NOD1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117872438 (NOD1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tst04054
]
117872438 (NOD1)
Pattern recognition receptors [BR:
tst04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117872438 (NOD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
CARD
NOD2_WH
LRR_4
FumaraseC_C
CRS1_YhbY
AAA_22
ABC_tran
zf-Tnp_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
117872438
NCBI-ProteinID:
XP_034616773
LinkDB
All DBs
Position
2:74540414..74597724
Genome browser
AA seq
951 aa
AA seq
DB search
MEGQSCANTEIIQQVASGSSPPPFLNLLKIHRELLVSKIRNTQCLFDNLIKNEYFSTEDA
EIAAQFPTQADKVRKILDLVQSKGEEVSEYFIYILQEVSDAYYELQPWLDEIEFHPSQNI
QNKPVVNTDPVSRYRQKLKYELARDTKFVMSYAQKEEMLLEETYAASLIELVSYTNESLG
KVSCLEDLFDDRIGLINEDGETIYIFGDAGIGKSILLQKMQNLWARGELDVGAKFFFRFR
CRMFSCFKENEAICLKDLLFKYNCYPDQDPEEVFNHILHFPHTALFTFDGFDEIHSDFDL
SSIPEICSPNEPIHPLALLVNLLSGKVLKGSRKVLTARTGTEIHQNIIRKKVLLRGFSSN
NLKEYTKKFFRDEECRVLMSNQLEANPSLCSLCSVPLFCWIIFKCFELFHSMFDSHELPN
YSVTLTDVFLLMTEVHLNRTLKTNLLKKNTRSQVETFRSKKETLFSLGKIAHMGMEKSLF
FFDQEEVTSLNMSEQDLHLGFLRTVHDCGGYGDQSFYEFLHLTLQSFFTALFLVTEEKLG
TKELLKFFAECSSTETAQSTCFPISWVHKRSIGEDPFRNKEHFHFTNLFLCGLLSKDKEK
LLRHLVSPAAIKRKRNALITYLLESMKFQLQSLMRAKLKGYKQIQVMPNFVWMLRCIYET
QSEKLAKLTVRGMRANYIKLTYCNAYSSDCSAISFVMQHFQKHLGLDLDNNNINDYGVKQ
LLPCFNKLAVIRLSVNQITDHGVRVLYDELSKFKIVTTLGLYNNQITDVGAKYVARLIEE
CSSLTYVKIGANKITTEGGKCLALAIQKSKTMYDIGMWGNQVGDEGAKAFAEALRNHPTL
TNVSLAFNGITPEGGKSIAEALKHNNTVKIFWLTKNAIDDDAAESFAEMLRVNKKLAHLW
LIQNQITAKGAKYLSEALQENTTIKEICLNGNLINQEEAKAFANEERIICF
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtcagtcttgtgctaacacagagattatccagcaagtagcctccggatcaagt
cctccacccttccttaacttgctgaaaatacatcgagaacttttagtcagcaaaatccga
aacacccagtgtttgtttgacaacttgattaagaatgaatacttctctactgaagatgca
gagattgctgcacagtttcctactcaagccgacaaggttcgtaaaattctggatctggtt
caaagcaaaggagaagaagtttcagaatatttcatctacatcctgcaagaagtctctgat
gcgtattacgaactacagccttggttggatgaaatagaattccacccttcacagaatatt
caaaataaacctgttgtaaatacagatccagtcagcaggtaccgtcagaaactcaaatat
gaattggcacgagacacaaagtttgttatgtcgtatgctcagaaggaggaaatgctgctg
gaggaaacctatgctgctagtcttatcgagctggtcagttataccaatgagagcctaggc
aaggtgagctgcctagaagatctgtttgatgatagaattgggttaattaacgaagatgga
gagacgatctacatctttggtgatgcaggtattggaaaatccattttgctgcaaaagatg
caaaatctttgggccagaggagaattggatgtaggtgccaaatttttcttccggttcagg
tgcaggatgtttagctgttttaaggagaatgaagccatctgtttgaaggatctcctgttc
aaatacaactgttacccagaccaagaccccgaggaggtattcaaccacatcctgcacttc
cctcatacagccctcttcacgtttgatggttttgatgagatccattccgactttgacttg
agcagcatccccgagatctgctcacccaatgaacctatccaccctcttgccctgttggtg
aatcttctcagtggaaaggttcttaagggatcaaggaaagttctgacagcaaggacagga
actgagatccatcaaaacatcattaggaagaaagtactgctccgagggttttccagcaat
aacttgaaggaatacactaagaaattcttcagagacgaggagtgtcgggtattgatgtcg
aaccagctggaagcaaaccccagtctctgcagtttgtgttcggtgcctttgttttgttgg
attatctttaaatgctttgaactcttccattccatgtttgacagtcatgagcttccaaac
tactcagttacactcacagatgtttttttgctcatgactgaagttcacttgaaccgaact
ctgaaaacaaatttgctgaagaagaacaccaggagccaagtggagactttcaggtcaaaa
aaggaaactctgttctctttaggtaaaatagcacacatggggatggagaagtctctcttt
ttctttgaccaggaggaagtcacatccttgaacatgtcagagcaggatttgcatctggga
ttcctcagaacggttcatgactgtggtggttatggagaccagtccttctatgagttctta
cacttgaccttgcagtcttttttcacagctttgttcctagttactgaagagaaattgggt
acaaaggagttactgaagtttttcgcagagtgctcttccactgagactgcccagtctact
tgtttccctatttcctgggtgcacaaacgctctataggagaagatcctttccgaaataaa
gaacattttcacttcaccaatcttttcctctgtggtctgctttccaaagacaaggagaag
ctcctcagacatttagtttcacctgcagccattaagaggaaaagaaatgcgctcatcaca
tatctcttggaaagcatgaaatttcaattgcagagcctgatgcgggcaaaacttaagggt
tataaacagattcaggtcatgcccaattttgtttggatgctgaggtgcatttatgagact
caaagtgaaaaactagccaagctgactgtcaggggcatgagggccaactacatcaaactc
acctattgcaatgcctattcgtcggactgcagcgctatatcctttgtgatgcagcacttt
cagaagcatctgggtctggatctagacaacaataatatcaatgactatggagtaaaacaa
cttctaccttgttttaacaagcttgcggtgatcaggctgagtgttaatcagatcacagat
catggagtaagagtactatacgatgagctctccaagttcaaaattgtgactaccctgggc
ttgtacaacaaccaaattactgatgttggagccaaatacgttgcaagactcattgaagaa
tgttcaagcctcacatatgttaaaataggagcaaacaagataaccactgaaggagggaaa
tgtcttgcccttgctatccagaagagcaaaacgatgtatgacattgggatgtggggtaac
caggttggagatgaaggagcgaaggcatttgctgaggcgctgaggaatcaccccacctta
acgaatgtgagtcttgcattcaatggcatcacgccagagggaggcaaaagcattgccgaa
gctttgaagcacaacaacaccgtgaaaatattttggttgactaaaaatgcgatagatgac
gacgctgcagagagctttgcagagatgctgagagtcaacaagaagctagcgcatttatgg
cttatccagaatcagattacagccaaaggggccaaatacctcagcgaagctctccaggag
aacacaaccattaaagaaatctgcttaaatgggaacctgatcaaccaagaagaggccaaa
gcctttgcaaatgaagagcggattatttgcttttga
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