Trachemys scripta elegans (red-eared slider): 117872488
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Entry
117872488 CDS
T07347
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117872488 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117872488 (EXOSC7)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117872488 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117872488 (EXOSC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117872488
NCBI-ProteinID:
XP_034616870
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Position
2:complement(78650644..78686251)
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AA seq
291 aa
AA seq
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MASVVLSEAEKVYIVHGIQEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILV
GVKAEMGTPKLENPNEGYLEFFVDCSANATPEFEGRGGEELATEIVNTLYRIFSSESTID
VKSLCINPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLEDEEGSKEI
ELSDDPYDCIRLNVENVPCIITLSKIGCRHVVDATLQEEACSLASLLLSVTSRGTLTCMK
KLGNGSLDPESIFEMMETGKRVGKMLHTSLQKILDKEESLGTTRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgtggtgctgagcgaggcggagaaggtctacatcgtgcacggtatccaggag
gatcttcgggtagatggccgtggctgtgaagactatcgatgtattgaagtggaaacagat
gtagtatcaaacacaagtggatctgcaagagtgaagcttggacatacggacatcctggta
ggagtcaaagctgaaatgggaacaccgaagttggagaatccaaatgaaggctaccttgaa
ttctttgttgactgttcagcaaatgccactcctgaatttgaaggccggggaggagaagag
cttgccacagaaatagtaaatacgctctacagaatatttagcagtgagagcaccatagac
gtgaaatccctttgtattaatcccagggagcactgctgggttctctatgttgatgttttg
ttattggaatgtggtggcaacctcttcgatgcaatctctattgcagtgaaggcagctctc
tttaatacgaggatacccaaagtgcgtgttttggaggatgaagaaggatcaaaagagatt
gagctctctgatgacccttatgactgtattcgacttaacgtggagaatgtaccctgtatc
atcacattaagcaaaattggttgtaggcatgtagttgatgccacccttcaggaagaagct
tgctctttggccagcctgctgctttctgtgaccagcagaggtacccttacgtgtatgaag
aaattggggaatggtagtcttgatccagagagtatctttgagatgatggagacaggaaaa
cgggtaggcaaaatgttgcacacttccctacagaagatcttagacaaagaagagagtctg
gggacaacacgacagaaggttggattcctaggctga
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