Trachemys scripta elegans (red-eared slider): 117872799
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Entry
117872799 CDS
T07347
Symbol
CDH12
Name
(RefSeq) cadherin-12
KO
K06804
cadherin 12, type 2, N-cadherin 2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117872799 (CDH12)
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Major cadherins
117872799 (CDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
Stevor
Cadherin_4
Fibulin_C
ASFV_J13L
DUF443
YxzE
RIFIN
VirB3
Motif
Other DBs
NCBI-GeneID:
117872799
NCBI-ProteinID:
XP_034617474
LinkDB
All DBs
Position
2:complement(136274147..136837107)
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AA seq
794 aa
AA seq
DB search
MLTRNCLSLLLWVLFDGGLLTPLHPQLQQTLEARPRENVVTMPGRRSSAQRVKRGWVWNQ
FFVLEEYMGSEPQYVGKLHSDLDKGAGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDRE
EKPFYTLRAQAVDIDTRKPLEPESEFIIKVQDINDNEPKFLDGPYVASVPEMSPVGAYVL
QVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAK
DMGGQLGGLAGTTTVNITLTDVNDNPPRFPKSIFHLKVPESSLVGSAIGRIRAVDPDFGK
NAEIEYNIVPGDGGNLFDITTDENTQEGVIKLKKPLDFETKKAYTFKVEASNVHLDHRFH
SVGPFKDTATVKINVLDVDEPPVFSRPMYTMEVYEDTPVGTIIGAVTAQDLDVGSSSVRY
FIDRKSDSDSYFTIDGSEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSKVNVIINVL
DVNEFPPEISVPYETSVCENAKPGQVIQTVSAADKDLSPAGQRFSFRLSPEASTKPNFTV
QDYRNNTAGIETRRSGYSRRQQDLYFLPVVIEDSSYPVQSSTNTMTIHVCRCDSDGTILS
CNVEAIFLPVGLSTGALIAILLCIVILLVIVVLYVALRRQKKKDTLMTSKEDIRDNVIHY
DDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCFPRQRPPVEDNTDIRDFINQR
LQENDADPTAPPYDSLATYAYEGNGSVAESLSSIDSLTTEADQDYDYLSDWGPRFKVLAE
MFGEEENYNTDKVT
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcttacaaggaactgtttatccctgcttctctgggtcctgtttgatggaggtctccta
acaccactgcatccacaactacaacagactttagaagcacggccgagagaaaatgttgtc
acaatgccagggaggaggtcatccgcccagcgggtcaaacgaggctgggtatggaatcag
ttttttgtgctggaggaatacatgggctctgaaccccagtatgtgggaaagcttcattct
gacttggacaagggagcgggcactgttaaatacaccctctcaggagatggagctggcaca
gtgtttaccatcgacgagaccacaggggacatacacgccataaggagccttgatcgagaa
gaaaagcctttctacacactccgtgctcaggctgtggacatagacaccaggaaaccactg
gagcctgaatcagagttcatcatcaaagtgcaggacattaatgataatgagccaaagttc
ctagatggtccatatgttgccagtgtaccagaaatgtctccagtgggtgcatatgtgctt
caggttaaagctacagatgctgacgatccaacatacggaaacagtgccagagtggtttat
agcattcttcaggggcaaccatacttctccattgatcctaagacaggtgtaataagaaca
gctttgccaaacatggacagagaggtcaaagaacaatatcaagtcctcatccaagccaag
gatatgggaggacagctgggaggattagctggaactaccactgtaaacataactctcacc
gatgtcaatgacaacccacccaggtttcccaagagtatcttccatttgaaagtacccgag
tcctcccttgttggttcagccattggaagaatcagagctgtggatcctgactttgggaaa
aatgcagaaattgaatacaacattgtcccaggagatggaggaaatttgtttgacatcact
acagatgagaacacccaggaaggggtcatcaaactgaaaaagccattagactttgaaaca
aaaaaggcatatacctttaaagtagaggcctccaatgttcatcttgatcatcgattccac
tctgtgggtccattcaaagatacagccactgtgaagatcaatgtgttggatgtggatgaa
cctccagttttcagcaggcctatgtacaccatggaggtttatgaggatactcctgttggg
acgattataggtgctgtaactgcacaggaccttgatgttggcagcagttctgttaggtac
ttcatagatcgcaagagtgattcagacagctactttacaatagatggatctgaaggaacc
attgcaactaatgaattactggacagagaaagcaccgcacagtacaatttctctataatt
gcaagtaaagttagtaatccattactaaccagcaaggtcaatgttataataaatgtctta
gatgtcaacgaatttcctccagaaatttcagtgccatatgagacatctgtatgtgaaaat
gcaaaaccgggacaggtaattcagactgtcagtgctgcggacaaagatttgtcccctgct
ggacaaaggttttcctttagactgtcacctgaggcgtccaccaaaccaaatttcacagtc
caagactacaggaacaacacagctggaattgaaaccaggagaagtggctacagccgtagg
cagcaagacttgtatttcctcccagttgtgatagaagacagcagctatcctgtacagagc
agcacaaacacaatgactatccacgtttgtagatgcgattctgatggtaccatcctatcc
tgcaatgttgaagcaatcttcctaccagttggactcagcacaggagctttgatcgcaata
ttgctgtgtattgttatacttttagtcattgttgtgctgtacgtagcacttcgaaggcag
aagaaaaaagacaccctgatgacctctaaagaagacatcagagacaatgttatccattat
gatgatgaaggaggtggggaggaagacacccaggctttcgacatcggtgccctgaggaat
ccaaaagtgattgaagataacaaaatacgcagggatataaaaccagactctctatgtttc
ccacgtcagagaccaccagtggaagacaacacagacataagagatttcattaatcaaagg
ctgcaggaaaacgatgcggatcccactgcacccccttatgattcactggcaacctatgcc
tacgaaggaaatggatctgtagcagagtctctgagctctatagattcacttactacagag
gcagaccaggattacgattacctgagtgactggggaccccgctttaaagtcttggcagag
atgttcggagaggaagaaaattataatactgataaagtcacttaa
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