Trachemys scripta elegans (red-eared slider): 117873056
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Entry
117873056 CDS
T07347
Symbol
POLB
Name
(RefSeq) DNA polymerase beta isoform X1
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117873056 (POLB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tst03400
]
117873056 (POLB)
Enzymes [BR:
tst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117873056 (POLB)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
117873056 (POLB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
117873056 (POLB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
HHH_5
NTP_transf_2
Cdd1
IMS_HHH_1
DUF3900
Motif
Other DBs
NCBI-GeneID:
117873056
NCBI-ProteinID:
XP_034617949
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All DBs
Position
2:complement(157460508..157488250)
Genome browser
AA seq
369 aa
AA seq
DB search
MSKRKAPQESPNAGITDFLSELANYEKNVNRAIHKYNAYRYKRNLCFQRESLENDCPYHV
GNRARYLRINSKFRKAASVISKYPSKIKSGAEAKKLEGVGAKIAEKIDEFLSTGKLRKLE
KIRQDDTSSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNEHKLNHHQRIGLKYFEDF
EKRIPREEMLQMQEIVLKEVKKLDPEYIATVCGSFRRGAESSGDMDILLTHPSFTSESTK
QPKLLHQVVEQLKKIHFVTDTLSKGDTKFMGVCQLPNEEDGTNYPYRRIDIRLIPKDQYY
CGVLYFTGSDIFNKNMRTHALEMGFTINEYTIRPLGVTGVAGEPLPVESEKDIFDYIQWK
YREPKERSE
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcggaaggcgccgcaggagagccccaatgcggggatcacagacttcctgagc
gagctggcgaactacgagaagaacgtgaaccgagccatccacaagtacaacgcgtacaga
tacaagagaaacttgtgtttccagagagagagcttggaaaatgactgtccgtatcatgta
ggtaacagagcacgatatttaaggatcaacagtaaattcagaaaagcagcttctgtaata
tccaagtatccaagcaagataaaaagtggagctgaagcaaagaagctggaaggagtaggg
gctaaaatagctgagaagattgatgagtttttatccactggaaaactacgtaagcttgaa
aagattcgacaggatgatacaagctcatctatcaatttcctgacccgagttagtggcata
ggtccttctgcagctaggaagcttgtggatgaaggcataaagacattggaagatctaagg
aaaaatgaacacaagctaaatcatcatcagcgaattgggctaaaatattttgaagacttt
gagaaaagaatccctagagaagagatgttacagatgcaggaaattgtattgaaagaggtt
aagaaactggaccccgaatatattgctacagtctgtggcagtttcaggcgaggtgcggaa
tcaagtggggatatggatattctcctgacccatccaagtttcacttctgaatcaaccaaa
cagccaaagcttttgcaccaagttgtagaacaattgaaaaaaatccactttgtcacggac
acattgtcaaagggtgatacgaaattcatgggtgtatgtcagttgccaaacgaagaagat
ggaaccaattatccatacaggagaattgatatcaggctgatccccaaggatcaatattat
tgtggggtactgtacttcacaggcagtgacatattcaataagaacatgagaactcatgcc
ctggaaatgggtttcacaatcaacgagtacacaatccggcccttgggagttactggagtt
gctggggagcccctcccagtagagagtgaaaaggatatctttgactacatacagtggaag
tatcgagagccaaaagaacggagtgaataa
DBGET
integrated database retrieval system
