Trachemys scripta elegans (red-eared slider): 117873238
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Entry
117873238 CDS
T07347
Symbol
NHLRC1
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117873238 (NHLRC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117873238 (NHLRC1)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117873238 (NHLRC1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117873238 (NHLRC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-C3HC4_3
Baculo_IE-1
zf-C3HC4
zf-C3HC4_4
Prok-RING_4
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_11
DUF4668
Motif
Other DBs
NCBI-GeneID:
117873238
NCBI-ProteinID:
XP_034618278
LinkDB
All DBs
Position
2:complement(176288246..176295087)
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AA seq
400 aa
AA seq
DB search
MSARAPDRMQIMTELVNETEVSLLECKVCFEKYSQKKKHRPRNLPCGHVICLECVFSLAH
PRNFRLECPFCRRACKSSETSDCLPLLHLIEILSRATNIPLASGTTTGTGDEAAVSASLG
LTFNLSFGGWGTLINPTGIAMCRGSDCVVVAHDGKKRIKLFGLSGSCIQQFGERGDAGND
IKYPLDVTVTLDGHVVVTDSGDRSVKVFDFNGRGKLIIRESFCLPWGLDTTPENEIILSD
PEAGALSRLTANFKKGELKKIQKIQSNLCNPREVAVSQTSGIIAVIEHLIAKGPNYSSTR
VKIFSADMKLIGQMDSFGLNLVFPSKIYATDLAFDREGHIIVADAYNRVVLCLGKPEEFP
VLRPIITQGLSYPVALTYTANNSLIVLDSGDHSIKVYTAS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccagggcccctgatagaatgcagattatgacagaactggtcaacgaaactgag
gtcagtctacttgaatgcaaagtgtgttttgaaaaatatagccagaagaagaaacaccgg
ccaaggaacttaccttgtggacatgttatatgcttggagtgtgtattctctctagcacac
ccaaggaattttaggttggagtgccctttctgtcgaagagcttgcaaatcctcagagaca
agtgactgcttaccattgctgcacctgatagagatcttaagccgcgcaactaatattcct
ttagcttcaggaacaacaactgggacaggtgatgaagcagctgtatcagcatctcttggc
ttaacgttcaacctttctttcggaggctgggggacgctgattaatccgactgggattgca
atgtgtcgggggtctgactgtgtagtagtggcacatgatggcaaaaaaaggattaagctg
tttggcttgagtggaagctgtatacaacagtttggggaaagaggagatgcaggcaatgat
attaaatacccacttgacgtgacagtcacattggatggccacgtggttgtcacagacagc
ggagatcgctctgtgaaagtgtttgattttaacggaagaggcaagctaattatcagggaa
tccttttgtttgccatggggtttggataccaccccagagaatgaaattatcctgtctgat
ccagaagcaggtgctctttctcgcttgacagccaattttaaaaaaggagaactaaagaag
attcagaagatccagtctaacttatgcaacccaagagaggtggcagtttctcagacttct
ggaattatcgctgtaatagagcacctgatagctaagggaccaaactacagcagcacaaga
gtgaagatattcagtgctgacatgaaactcattggccagatggatagctttggtctaaac
ctagtgtttccctccaaaatatatgccactgatttggcctttgacagagagggacacata
atagtagcagatgcctataaccgagttgtattgtgcttaggaaaacctgaggaatttcct
gtcttaaggcccataattacccaagggctttcttatcctgtggcgttgacttacacagca
aacaattctctgattgtcttagacagtggtgatcattcaattaaagtatatactgctagc
tga
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