Trachemys scripta elegans (red-eared slider): 117873249
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Entry
117873249 CDS
T07347
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tst03016
]
117873249 (CDKAL1)
Enzymes [BR:
tst01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
117873249 (CDKAL1)
Transfer RNA biogenesis [BR:
tst03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
117873249 (CDKAL1)
Prokaryotic type
Methylthiotransferases
117873249 (CDKAL1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
117873249
NCBI-ProteinID:
XP_034618300
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Position
2:177558782..178317838
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AA seq
578 aa
AA seq
DB search
MPAACDSLLEDIEDIVSAQDVKPHDRQFARKNVVPKVRKRSSQKNVQADDDPPSDSIIPG
AQKIWIRTWGCSHNNSDGEYMAGQLASYGYKITENAAEADLWLLNSCTVKSPAEDHFRNS
IKKAQEDNKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK
KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA
KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVDVIPEGAMLRLGMTNPPYILEHL
EEMAKILNHPRVYAFLHIPVQSASDSILMDMKREYCVADFKRVVDFLKEKVPGITIATDI
ICGFPGETDEDFQDTMKLVEEYRFPSLFINQFYPRPGTPAAKVHQVPALVKKQRTKDLSQ
LFHSYSPYDHKVGERQRVLVTEESFDSQFYVAHNQFYEQVLVPKDPEFMGKMVEVDIYEA
GKHFMKGRPVSDANVFTPSITRPLAKGEVSGITEEFRYVLENGLNLKACPSPGIREKASL
SSRMVMQLPWLQEGGGLKMLSVSLALLAILVTFYYRGV
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgcttgtgattcactgcttgaagatattgaggatattgtgtcagcacaagat
gtgaaaccacatgaccgacagtttgcacgaaagaatgttgttcctaaagtgcgaaaacgc
agttcacaaaaaaatgttcaggcggatgatgatccaccaagtgatagcattattcccggt
gctcaaaaaatctggatacgcacatggggatgttctcataataattcagatggagaatat
atggctggacagttggcttcttatgggtacaaaattacagagaacgccgcagaagcagac
ttgtggcttcttaacagttgcacggtaaaaagcccagctgaagatcacttcagaaactca
attaagaaagcccaagaagacaacaagaaagtggttttagctggatgtgttccacaagcc
cagcctcgtcaagactacctcaaaggtctgagcattataggggttcagcaaatagaccgt
gtagtagaagttgtggaggaaactattaaaggtcactctgtgagactgctgggtcagaaa
aaagataatggaaaacggctggggggagctcgattggatttgccaaagattaggaagaac
ccactgatagaaatcatttccatcaatacagggtgtctcaatgcatgtacctattgcaaa
accaaacatgccagaggagacctagcaagttatccaattgaagaactagtggacagagcc
aaacagtcttttcaagagggtgtttgtgagatatggctgaccagcgaagatacaggggct
tatggcagagacattggcacagaccttcctacacttctgtggaagctggttgacgttatt
cctgagggagctatgctgagacttggcatgacaaatcctccctatattttagagcatctg
gaggaaatggcaaagattctcaatcatccaagagtatatgcttttcttcacataccagtc
caatctgcttctgacagcatactcatggacatgaaaagagaatactgtgtggcagacttc
aaacgggtagtggatttccttaaagaaaaagtgcctggaataacaattgctacagacatc
atctgtggttttccaggggagacagatgaagattttcaagacaccatgaaacttgtagaa
gagtacaggtttccaagcctctttattaatcagttttacccacgtccagggactcctgct
gcaaaagtacatcaagttccagccctagtgaaaaagcaaagaacaaaggatctatcccaa
ctatttcattcatacagtccttatgatcataaggttggtgagagacagagagttctggta
acagaagaatcttttgattcccagttttatgttgctcacaatcaattctacgagcaggtt
ctcgtgccaaaggatcctgaattcatgggtaaaatggtagaagtggacatttatgaagca
gggaaacattttatgaaggggcggccagtgtcagatgccaatgtgttcactccatccatc
accagaccgctagcaaaaggagaggtttccggtataacagaggagttcagatatgtgctg
gaaaatggcttgaatttgaaagcatgcccctcccctgggatccgagaaaaagcatcactc
agttccaggatggtgatgcaacttccttggctgcaagaaggaggtggactgaagatgctg
tctgtcagcctggctttactggcaattcttgttactttttattatcgaggtgtttaa
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