Trachemys scripta elegans (red-eared slider): 117873361
Help
Entry
117873361 CDS
T07347
Symbol
LAMA1
Name
(RefSeq) laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117873361 (LAMA1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117873361 (LAMA1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117873361 (LAMA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
3keto-disac_hyd
Hepar_II_III
DUF713
Motif
Other DBs
NCBI-GeneID:
117873361
NCBI-ProteinID:
XP_034618536
LinkDB
All DBs
Position
2:198278093..198422671
Genome browser
AA seq
3109 aa
AA seq
DB search
MSCCCSCRWLLLASLLWAVGECQLRGLFPAILNLASHAHINTNATCGEKGPEMFCKLVEH
VPGRPLRNAQCRVCDHNSANPKEQHPISNAIDGTNNWWQSPSIQNGREYHWVTITLDLRQ
VFQVAYVIIKAANAPRPGNWILERSVDGTEFRPWQYYAISDTECLTRYNVTPRLGPPTYK
RDDEVICTSYYSRLVPLEHGEIHTSLINGRPSADDPSQTLLEFTSARYIRLRLQRIRTLN
ADLMTLSHHDPKDLDPIVTRRYYYSIKDISVGGMCICYGHARSCPLDETTKKLQCQCEHN
TCGESCNECCPGYHQNPWRPGTISAGNKCEKCNCHNKAEDCYYHQGVADQNRSINIHGQF
IGGGVCINCTQHTTGINCEICADGYYRPYKVSPYEDNPCHPCDCDPFGSLSSDCIKDDDH
SDLQHGTQPGQCQCKEGYTGEKCDRCAFGYKGYPSCVHCNCSLVGSINDDPCTEPCLCKE
NVDGENCDRCKPGFYNLQERNPQGCTECFCFGVSDVCDSLAWPISQVSDMAGWLVTDLYT
EKSVEPQQGQFDGPHQISVNNTAAVKILKSTYYWSAPEPYLGNKLTAFGGYLKYTVSYDI
PMESVDSDMVSNVDVIIQGNGQILSTRSEGLSLQPYEEYSNAVKLVSENLIDFNTKKAID
RDRLMTVLANVTHLLIRASYNVAKRAIYRLDSVTLDTASSNAIDLSAAAEVEHCECPQGY
TGISCESCLSGYYRVGGILFGGICQPCDCNGHATECDIHGVCFACQHNTTGLSCDQCLPG
FYGTPSRGMPEDCQPCACPLRTDTNNFSPTCHMDNRGEVICDKCLPGYAGSRCERCANGY
YGNPLVPGESCVPCDCNGNIDPTEDGHCDALTGECLKCVRNTQGHHCEKCADGYYGDAVI
AKSCHVCECHVNSSLSNICHPETGLCHCKPNVIGPRCDTCVNGYYGLNTGLGCLPCNCSQ
YGSVSEDCNDEGQCHCVPGVAGEKCDHCAHGFYAFQDGGCTPCDCAHTQNNCNEDSGQCI
CPPHTQGLKCELCEDNHWGLDPEHGCKACDCSDVGSTSLQCDLQTGQCQCKDEFGGEDCS
RCALGYRDYPDCVSCDCDLSGTKADKCDESQGVCSCEEETGICACKENVFGFHCSECKTG
TFALHASNPLGCTPCFCFGLSEFCSELEDHVRIPVILTPDQSILHVVSQSNLTGTVEGVF
SQFSDVLLDATTVREHLKTEPFYWRLPDQFQGDQLMAYGGKLKYTVAFYALDGFGTSNFE
PQILIKGGRTSKLVIYVDISAPQNGVRIEEEVEMKEHMWKYFNSVSDQSVTRSDFMSVLS
NVEYILIKASYGQGLQQSRIANISMEIAVKAEEMHLGRETAHLIEQCECPTGYAGLSCQR
CALGYYRAKHVDLNIKEPRQLIAPCVPCQCNNHSETCDLETGKCLNCRDNTAGEHCSVCA
PGYYGKVIGSVNDCSLCACPRTNPTSFSPTCVLKDGHDFHCDACLTGYEGQYCERCSLGY
YGNPAMPGGSCQQCQCNPSGSIHNNCDHISGQCICKQGVTGQLCDACEPRHILVENECVS
CDDDCTGVLLNDLDHLDKAIFSVNFTSVTFAPYGILADVENTTKYMKGSLLSRDDPIYSL
EMAKEGLVNVSGGTDQLHKELTRILERGWQLNNATQRTMNESRHLTVFIDTLHTTIKVLA
EVAASLNETLALDFQLSNSTSQSLQEDISTMLEAMRRRHFMQQDQNVTTVLNAAERLLLR
IQKEYLKPQQELAELKKGASHLLTNHNIRLQEAQDLVNEACTNTNETNRLLFLIYSNLAE
LNDKKLNIQENKDLSIMLIKEGKVLMDVAAALATDVKNSTSNLEIHRDGLVLWNAKLRHH
VDDLVMQMSTRGALDLVYRAEDHAAEFQKLAEALDSGLSNVRNVSLNATNAVHAHSSITS
LIERTKNLADDASRVITNPLDSPEQSLDFLGKETLQLSSKFLNETKNLKRKNEGLVSRLN
GLKKKVEKIQESAHKITDQLNDSLLALRALSNDTSDKIFEAKELAVSANTSAVAGLSHIV
DFNQKLLNTSSELSKVNDTLRKTNELIMDSSKAAASAERQVKEVEAQANLLFDRLKPLKM
LEENLSRNLSEIKELISQARKQAASIKVAISADRDCIRAYSPQISSTNYNILTLNVKTTE
PDNLLFYLGSSGNSDFLAVEMRRGKVAFLWDVGSGATRLEYPNFQIDNNKWHRIHITRFG
KTGTLNIEETSSNQKSLSKTATAPGTATVLDVNKSTLMFVGGLGGQIKKSSAVKVTHFKG
CMGEASLNGKSIGLWNYIEREGACNGCFGSPQDEDTSFHFDGSGYSVVERALRSTVTQII
MFFSTFSPNGLLLYLASNGTRDFLSLELVDGKVRLTVDLGSGPLTLTTENRYNNGTWYKI
SFSRNKKQGVLAVMDAYNLNYKETKQGESPGVASDLNRSDKDPIYIGGLPRSRAVRKGLN
SRTYVGCIKNLEISRSTFDLLKNSYGVRKGCILEPIRSVSILNDGYIELLPKSLSPESEL
MVTFATKNSSGIILAGLSKGMEKRRRRQAHLPFFSIMLIDGHLAVHINAGDRASTRKIIL
QPANGTYSDGQEHSVILIRNKRMIIVQVDESNPAELRLGLSAEMSPMNISNFYAGGVPAG
EGISGFKMTGSFYGCIRNLIFNMQLLDFTTAVRYEHVDMDSCLLSEKPKPAIQAEDIEIQ
PELQPLPIPLRPLTNFERVHTTNLVHAAPVGKGQCAQDSIPDHVPGAHQFGLAKGSHIVL
LFNQSTVRRKLSIQLNLRTYASSGLIYYLAHQNQIDYAALQLHGGQLYFLFDLGKGKAVA
FHPAAISDGKWHTVKTEYVKRKGIITVDGQESATVNALGDGNTLDVEGKLYLGGLPLDYT
ARNIGNVTHSIPACIGSVMINNKQLDKESPVSILAVNKCYATAQEGTFFDGSGFAALVKE
GYKVRSDVNVTFEFRTMAMNGVLLGISSAKVDAIGLEIVNGKVLFHVNNGAGRITATYEP
RGANSLCDGKWHKLQANKSKHRIALMIDGNLVQADNPHIQSTSADTNNPIYVGGYPADLK
QNCLTSKSSFHGCLRNLKLIKGQQVESYDFNQAFDLRGVFPHSCPGAEH
NT seq
9330 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgctgctgctcctgcagatggctgctgctggcttctctgctctgggcggtcggg
gaatgccagcttcgaggtttgtttcctgctattttaaatctggctagccatgctcatatc
aacaccaatgccacctgtggtgagaagggaccagagatgttctgcaaacttgtggaacat
gtgccgggccgacctctacgcaatgcacaatgcagggtgtgtgaccacaacagtgctaac
cccaaagaacagcaccctatctccaatgctatagatggtacgaataactggtggcaaagt
cccagcattcagaatgggagggaataccattgggtcaccatcaccctggatctaagacag
gtctttcaagttgcatatgtcataatcaaagctgctaatgctccccgacctggaaactgg
attttggaacgttcagtggatggcactgagttcagaccatggcagtattatgcaattagt
gacacagagtgcttaactcgttataatgtaacaccaagacttgggcctcctacttacaag
agagatgatgaagtgatctgcacctcttattattccaggctagttccattagaacatgga
gagattcacacttcgttgatcaatggtagacctagtgctgatgatccttcacaaacacta
ttggagtttacttctgcacgatatatccgtcttcgcctgcaacgtattagaacccttaat
gctgacctcatgactcttagccaccatgatcctaaagaccttgatcccattgttaccaga
aggtattactattcaataaaggatatctctgttggtggcatgtgtatttgctatggccat
gctcgaagctgcccactggatgaaaccacaaagaaactgcaatgccagtgtgaacataat
acatgcggagagagctgcaatgagtgttgccctggttaccatcaaaatccatggagacca
ggaactatttctgctggcaacaaatgtgagaagtgcaactgtcataacaaagcagaagat
tgttattatcaccagggtgtggcagatcagaataggagcataaatattcatggacagttc
ataggaggtggagtctgtataaattgtactcagcacactactgggatcaactgtgagatc
tgtgccgatggatactatcggccatataaagtttctccctatgaagataacccttgccat
ccttgtgactgtgatccatttgggtctttgagttctgactgcattaaggatgatgatcat
tctgatcttcagcatgggactcagccaggtcagtgtcaatgcaaagaaggttacacagga
gaaaaatgtgatcgctgtgcatttggctacaagggctacccaagctgtgtgcactgtaac
tgcagcctggttggaagcattaacgatgacccttgcacagaaccttgtctttgcaaggaa
aatgtagacggtgaaaattgtgaccgctgcaaaccaggattctacaatttgcaagaaagg
aatcctcagggctgtacagagtgcttctgcttcggggtttctgatgtctgtgacagcctt
gcatggcccatcagtcaggtgtcagatatggctggatggctggtgactgatctgtacact
gaaaagagtgtggagccccaacaaggccagtttgatggaccccatcaaataagtgtcaac
aacacagcagctgtgaaaatactgaaatccacttattactggtcagcacctgagccatac
ttaggaaataaactcactgcctttggtggatacttgaagtacactgtgtcttatgatatt
ccaatggaaagtgtggacagtgatatggtatctaatgtggatgttatcattcaaggcaat
ggacagattctgagcaccagatctgaggggttgtcattgcaaccctatgaggagtactct
aatgcagtaaagcttgtgtctgagaacttaatagactttaatacaaaaaaggctatagat
cgggaccggctgatgactgttttagcaaatgtgactcatcttctgatcagggccagttac
aacgttgcaaaaagagccatatacaggttggactctgtcaccctggatacagcaagctct
aatgctatcgatctgtcagcagcagcagaggtggaacactgtgaatgtcctcaaggttac
acagggatttcctgcgagtcctgtctttctgggtactaccgtgtgggtggaatactcttt
ggaggtatttgtcaaccctgcgactgcaatggccatgcaactgaatgtgatattcatggt
gtttgctttgcttgtcaacacaacactacaggactttcctgtgatcaatgcttgccaggg
ttctatggaactccatcccgaggaatgccagaggactgccagccatgtgcctgcccacta
agaactgatacaaacaatttcagtcccacctgccacatggacaatagaggtgaagttatc
tgtgacaagtgtctgccaggctatgcaggatcacggtgtgaaagatgtgctaatggttac
tacggaaatccactggtgcctggagagtcatgtgttccttgtgactgcaatggcaatata
gatccaacagaagatggccactgtgatgcactcacaggagagtgtctgaaatgcgtaagg
aacactcaaggccatcactgtgaaaagtgtgctgatgggtactatggggatgcagtgatt
gctaaaagctgtcatgtctgtgagtgccatgtgaatagctccctttccaacatttgccat
cctgagactggcctatgtcactgcaaaccaaatgtgattggaccaagatgtgatacatgt
gtgaatggctattatggcctgaatactggacttggctgccttccctgtaattgcagtcaa
tatggctccgtctccgaggattgtaatgatgaaggacagtgtcactgtgtacctggagtg
gctggggagaagtgtgatcactgcgctcatggcttttatgcattccaggatggtggctgt
acaccttgtgattgtgctcatactcagaacaactgtaatgaggattctggccagtgcatc
tgcccccctcacacgcaaggactaaaatgtgaactctgcgaggacaatcactggggtctt
gatcctgaacatggctgtaaggcctgtgactgcagtgatgtaggttcaaccagtctccag
tgtgacttacagacaggtcaatgccaatgtaaagatgaatttggaggagaagactgttct
aggtgtgccttaggctatagggactacccagattgtgtttcctgtgactgtgacttgagt
ggcaccaaagcagacaaatgtgatgagagtcaaggagtctgtagttgtgaagaagaaact
ggcatttgtgcctgcaaggaaaatgtatttgggtttcactgcagtgaatgcaagactgga
acctttgctctccatgctagcaaccctttaggatgcacgccgtgtttctgttttgggctg
tcagagttttgctcagaattagaagaccatgtgagaattccggtaatcttgactccagat
cagtccattctgcatgtggtttctcaaagtaacctcactggaacagttgagggtgtgttt
tctcagttttctgatgttttactggatgccacaactgtcagagaacacttgaaaacggag
ccattttattggaggttaccagaccagttccagggagaccagctcatggcctatggagga
aaactgaagtatactgttgctttttatgctttggatggctttggcacgtcaaactttgaa
ccacagattctgataaaggggggtcgcaccagtaaattggtcatctatgtggatatctct
gccccacaaaatggagtaagaattgaggaggaagtagaaatgaaggagcatatgtggaaa
tactttaactctgtgtctgaccaatctgtcacacgttctgacttcatgtcagtgcttagc
aacgttgagtatatccttatcaaggcatcatatggccaaggactacagcaaagcagaatt
gcaaatatatcaatggaaattgcagtgaaggctgaggagatgcatttgggcagagaaaca
gcacacctcatagagcaatgtgagtgtcctactggctatgctggactctcatgtcagagg
tgtgcgttggggtactacagggcgaaacatgtagacctgaatataaaagagcctcgccaa
ttgattgctccttgtgtgccatgtcagtgcaacaaccacagtgagacctgtgatctggaa
acaggaaagtgcctgaactgcagagataacacagctggtgagcactgtagtgtttgtgcc
ccaggctactatgggaaagtaattggatctgtcaatgactgctctctttgtgcctgtccc
agaaccaacccgacaagctttagtcccacttgtgttctgaaagatggtcatgatttccac
tgcgatgcttgtctcactggatatgaagggcaatactgtgaaaggtgttctctaggctat
tatggtaatcctgcaatgcccggcggcagctgtcaacaatgtcaatgcaatccaagtggc
tcgattcacaataattgtgatcacatatctggacagtgcatctgtaagcagggtgtgaca
ggacaactgtgcgatgcatgtgaacccagacacatccttgtggaaaacgaatgtgtttct
tgtgatgatgactgcacaggtgttttgttaaatgacttggatcacctggacaaagccata
ttttcggtaaacttcactagtgttacctttgcaccatatgggatattggcagatgtggag
aatacaacaaaatacatgaaggggtctttattgtctagagacgatccaatctattcactg
gagatggcaaaagaaggtcttgtgaatgtatcaggaggcacagatcaactgcacaaagag
ttgactagaatattggagagaggttggcagctcaacaatgcaactcaaagaaccatgaat
gagagtcgacatttgactgtatttattgacacactgcatacaaccatcaaagtacttgct
gaagtggctgcatctctaaatgagacgctggctctggatttccagttgtcaaacagtaca
tctcagagtctgcaggaagatatctccaccatgctggaagcaatgcgcagaagacatttc
atgcagcaggaccaaaatgtcaccactgtactaaatgctgcagagaggttgctgttacgg
attcagaaagagtatctcaaaccccagcaggaacttgcagaacttaaaaaaggtgcaagc
catctcttaacaaaccacaacatcagattacaagaagcccaggacctggtgaatgaggct
tgcactaacaccaatgaaaccaaccgtctgctttttcttatctacagcaacctggcagag
ttaaatgataaaaagctaaacatacaagaaaacaaggatctttccatcatgctaattaaa
gaagggaaagtattgatggatgttgctgctgcccttgccacagatgtaaagaactctacc
tcaaatctagagatccatcgagatggactggtcctatggaatgccaaactaagacatcat
gtagatgacctggtcatgcagatgtccacgaggggagcacttgatctagtctacagagca
gaggatcatgcagctgaatttcaaaaacttgcagaagcgctagatagtggtctctcaaat
gtaagaaatgtatctctgaatgcaacaaatgctgtccatgcccactccagcattacaagt
ctgattgaaagaacaaaaaatctggcagatgatgcttctagagttataactaaccccttg
gactcaccagagcaatctcttgattttcttgggaaagaaactttacagcttagttctaaa
tttctaaatgaaacaaaaaatctgaagaggaaaaatgaaggccttgtgtctagattgaat
ggattgaaaaaaaaagtggaaaagattcaggagagtgctcataaaattactgaccagctt
aatgattcactgctggcactgcgagcattgtctaatgataccagtgacaaaatttttgaa
gcaaaagagctggctgtgtcggctaacacaagtgctgttgctggtttaagccacattgtg
gatttcaatcagaagctgctgaacacttcttctgaattgtccaaggttaatgacacgttg
aggaaaaccaatgaacttataatggactcctcaaaagctgcagcctcagctgaaagacaa
gttaaagaagtggaagcacaagccaatcttttatttgacaggctgaaacctctgaaaatg
ttggaagagaacctgagcagaaatctgtctgaaattaaagagctcatcagtcaagcccgc
aaacaggcagcatctattaaagttgcaatctcagcggacagagattgtattcgtgcctac
tcaccccaaatttcttccactaactacaacatcttaacattaaatgtgaaaacaactgaa
cctgacaacctcctcttctacttgggtagcagtggcaatagtgacttcctggcagtagag
atgcgacgtggtaaggtggccttcctttgggatgtgggatcaggagcaacaagactggaa
tatccaaattttcaaattgataacaacaaatggcacagaatacatataaccaggtttggg
aaaactggtacattgaacatagaggaaacgagctctaatcagaagtccttaagtaaaact
gcaactgctcctgggacagctactgtactggatgtaaacaaatcaacactaatgtttgtt
ggaggacttggagggcaaatcaagaaatcgtctgctgttaaggtgactcattttaaagga
tgcatgggagaggcatccttgaatggaaaatctattggtctttggaactacattgaaaga
gagggcgcatgcaacggatgctttggaagcccacaggatgaagacacttctttccatttt
gacggcagtggatattcagttgtggagagggccctccgctccactgtgactcagataatc
atgtttttcagcaccttctcgcctaatgggctcctactgtatcttgcttctaatggcact
agagatttcttgtccctagagctcgttgatggcaaagttagattaactgttgatcttggt
tcaggacctcttacgcttacaaccgaaaatcgttacaataatggaacatggtacaaaatc
tcattcagtcgtaacaagaagcaaggagttttagctgtcatggatgcatataatcttaat
tataaagaaaccaaacaaggagaatcccctggggtagcctcagacctcaatcgctcagat
aaggacccaatttacattggtggactgccaagatctagggctgtgaggaaagggcttaac
agcagaacatatgtgggatgcattaagaacctggaaatatcccgctctacctttgacttg
ctaaaaaactcgtatggtgtgagaaaaggctgcatactggagcctatccgtagtgttagc
atcttgaatgatggctacattgagttgctacctaagtccctgtctccagaatcagaactg
atggtaacttttgctactaagaacagtagcggcatcatcttggctggtctcagcaaagga
atggagaagcgacgacgcagacaagcacatttgcccttcttttccatcatgctgattgat
ggtcatcttgcagtgcatattaatgcaggagacagagcaagtactagaaaaatcatcctc
cagcctgctaatggaacatacagcgatgggcaagaacattctgtcatcctgatccggaat
aagaggatgataatagtacaagtggatgaaagtaatcctgcagaactgagacttggcttg
tcggcagaaatgagccccatgaatatttccaacttctacgctggtggggttccagcagga
gagggcatttctgggttcaagatgacaggatctttttacggctgtattagaaatctgatc
tttaacatgcagcttctggatttcaccactgccgtgaggtacgagcatgtggatatggac
agctgcttgctttcagagaagcctaaacctgccatacaagcagaagatattgagattcaa
ccagaactgcagcctttgccaattcctctgcggcctcttaccaattttgagagagtacat
actacaaacttagtgcatgctgcccctgtcggcaaaggacagtgtgcacaggattcaata
ccagatcatgttcccggtgcccaccagtttggccttgctaaagggagccacatagtactg
ctttttaatcagtctaccgtcagaaggaaactttctatccagctgaatctgagaacctat
gcctctagtggcctgatttactacctggctcaccagaaccagattgattatgcagccctt
cagcttcatgggggacaactctatttcttatttgatcttgggaaaggaaaagcagtagcc
tttcacccggctgccatcagtgatggcaaatggcacacggtaaagacagagtatgttaaa
cgaaaaggcataatcaccgtcgatggacaggaatctgcaacagttaatgctctgggagat
ggtaacacgttggatgtggaggggaagctctatctgggagggcttcctttagattataca
gctagaaatattggaaatgtcactcacagtatccctgcatgcattggcagtgtgatgatt
aacaacaagcaactcgacaaagagagccctgtctccatccttgctgtgaataaatgttat
gcaacagcacaggaaggcactttctttgatggaagcgggtttgctgctctagtgaaagaa
ggttataaagtccgatctgatgtgaacgttacatttgagttccgcaccatggctatgaat
ggagttcttcttggaatcagtagcgctaaagtagatgccattggactggagattgtgaat
ggcaaggttttgttccatgtcaacaatggagctggcagaataacagccacatatgaacca
cgaggtgcaaatagcttatgtgatggaaagtggcacaagcttcaagcaaacaaaagcaaa
catcgcattgctctgatgattgatgggaatttggttcaggctgataatccccacatccag
tcaacatctgcagatacaaacaatcccatttatgttggaggctatccagctgatttgaag
caaaattgtctgacaagcaagagctcgtttcatgggtgtttgagaaaccttaagctgatt
aagggccaacaggtagaatcctatgacttcaaccaagcctttgacctgcgtggcgtgttt
cctcattcgtgccctggggctgagcactaa
DBGET
integrated database retrieval system
