Trachemys scripta elegans (red-eared slider): 117873414
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Entry
117873414 CDS
T07347
Name
(RefSeq) oxidized low-density lipoprotein receptor 1-like
KO
K10074
C-type lectin domain family 7 member A
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04145
Phagosome
tst04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117873414
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117873414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117873414
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tst04054
]
117873414
04090 CD molecules [BR:
tst04090
]
117873414
04091 Lectins [BR:
tst04091
]
117873414
Membrane trafficking [BR:
tst04131
]
Endocytosis
Phagocytosis
C-lectin receptors
117873414
Pattern recognition receptors [BR:
tst04054
]
Membrane-bound pattern recognition receptors
C-type lectin receptors
117873414
CD molecules [BR:
tst04090
]
Proteins
117873414
Lectins [BR:
tst04091
]
C-Type lectins
NK cell receptors
117873414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
Ly49
Holin_BhlA
DUF2130
DUF4446
V-SNARE_C
Lectin_N
OSTbeta
ZapG-like
Tetraspanin
DUF3683
Spc7
Motif
Other DBs
NCBI-GeneID:
117873414
NCBI-ProteinID:
XP_034618701
LinkDB
All DBs
Position
1:134359393..134405443
Genome browser
AA seq
252 aa
AA seq
DB search
MYTSAGLELTETAPIPEEEVIDEEVEAEDNVEPTAGSPEMSEQEVTYTELKFHTSAQQQR
RQTVEKTKSKDTPSPRWQLIALTLGIFCLVLLVTLGILGAEANRWQEKFTQQQEILENLT
HQQEILENLTQKLQEIQEKTSQEKEDLQAKNAELSKSLQFLQSKGNKCRICSKDEWMQNG
EDCYYFSTKIKTWFESKEYCSSLGSRLLKIDSKEELVSLKKLNYSSYWIGLSRNGADGPW
LWEDSTALSIDV
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtatacttcagcagggctggagctgacggaaactgcacctatcccagaggaggaagtg
attgatgaagaggtggaggcagaagacaatgtggagcccacagcggggtcgcctgaaatg
agtgagcaggaagtgacctacacagaactgaaatttcacacttctgctcaacagcaaagg
agacaaacagtggagaagaccaaaagcaaagacactccatctcctcggtggcagctcatt
gcactgactcttgggatcttctgcctggtgctgctggtaacgctcgggatcctgggtgct
gaggcaaacagatggcaggaaaagttcacccagcagcaggaaattctggaaaatctcact
caccagcaggaaattctggaaaacctcacccagaagctacaagaaattcaggagaaaacc
tctcaggaaaaggaagatctccaggccaagaatgcagagctttctaagtctttgcagttc
ttacagtcaaaaggaaacaaatgcagaatctgttcaaaggacgaatggatgcaaaatgga
gaggactgttactacttctctactaaaataaaaacttggtttgaaagtaaagagtattgc
tcttccctgggctccagactgctgaagatagacagcaaggaggagctggtctccctaaaa
aaactgaattattcctcttactggattggattatcccgtaatggagcagatgggccctgg
ctatgggaggacagcacagctctctccattgatgtgtaa
DBGET
integrated database retrieval system
