Trachemys scripta elegans (red-eared slider): 117873483
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Entry
117873483 CDS
T07347
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117873483 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tst01009
]
117873483 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117873483 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
tst03029
]
117873483 (RB1CC1)
Protein phosphatases and associated proteins [BR:
tst01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117873483 (RB1CC1)
Membrane trafficking [BR:
tst04131
]
Autophagy
Autophagosome formation proteins
ULK complex
117873483 (RB1CC1)
Mitochondrial biogenesis [BR:
tst03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
117873483 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
117873483
NCBI-ProteinID:
XP_034618808
LinkDB
All DBs
Position
2:complement(214710981..214896381)
Genome browser
AA seq
1593 aa
AA seq
DB search
MKLYVFVVNTGTTLTFDTELAVQNVSDLKHAIQTKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCERPPAIPKTTFSAENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCTYSYQKLLFKFENAYSNYLQ
SIDDIKLKLTHLGTAVSIMSKIPLLECLTRHSYRECLGRLDSSVGHGGAESEETEDEKSA
ELVLSSDIPRVHNKSLLASFCKSVEHSALDSTDPGNVKENRESSQNITVENSKTSEELSE
SDLPSFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFLVECRQTIAKLDNQN
MKAIKGLEDRLYALDQMIASCSRLVNEQKDLAQGFLANQKRAENLKDPSVLPDLCLSHAN
QLMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCFVMLHADQDGEKLQALFRLVTE
LLERVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAVALIKDGKHLYEAEKAKRESF
GKLFRKSFLRNRLFRGLDSWPPSFCTRKPRRFDSELPDILLTDLQFLQSFCPSEVQPLLR
VPILCDFEPLHQHVLALHNLVKTVQSLDEMSQTITDLLNEQKVSNSQASPQSATTPRMES
AKGTTIATSSRTPPSLSLQGPLSPPVCPPAPLDELSPDSIDAHTFDFETIAHPNLEQALK
QGSLDLDSLAESPESDFMSAVNEFVIEENPSSPNIVSDPQSPEMMVESLYSSVINAIDNR
RMQDTNICVKEDSLNARMEKCRVVAQESQFNLKNIKEDLCHFRTFVQKEQCDFSNSLKCT
SVEIRNIIQTVKLSLEKALKDKHQKELQSLKSEYETRIDTLLEDVEENKKKIKKLTGDLI
GLEEVLQNKDNEFAMVKNEKEAVVCLQNEKDQKLLALEGQMKDQNCEIKELRLSREMVLE
DLKKFHIENDEKIQLLRAELQSLEQSHLKELENNLQIKHTQEFEKLIAEHKDCLDKLKKE
NQQRFEQMQESHAAVVQEKEQQIEKLKLKISDLFDVRCKLEVELAMKEADTDEMKILLEE
SRTQQQEILKSLINKETEHLRKELDNLNHKIQVNNDEYQVGLVELRTLMTIEKDLCISEL
VDRHEEETNVLKIELNRVTSLHQKAFEVEKSLKEQIIELQSKLEVEANALEKQKEEKLAV
CEQKDKFEAVIHNLEEEKELLITNQEQERKLLVQRLSSEKEDAIRITLKESELQREAVEK
ELLEKIQLLEMQVNQSPSIELSAASSLVIELQEKLEEEKIKFLEQLEEQEKRKNEEMQNF
RMSLTAEQQTNFNTVLTREKMKKENIINDLSDKLKTITQQQERDKDLIETLSEDRARLLE
EKKKLEEVNKMRSSNFIPSAYLPTASESCEACAPDLPAETERVASEITDEGRLDSAMETS
MMAVHENIHMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLAALDLKPGECASGASRRPWVLGKVME
KEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtatttgtggtcaacactggaactaccctcacctttgacacagaactt
gcggtacagaatgtgtccgaccttaaacatgcaatccaaaccaagtataagattgccatt
cagcaccaggtgctggttgtcaatggaggggagtgtatggcagcagacagaagagtctgc
acttacagtgctggaacagacacaaacccaattttcctgttcaacaaagagatgatctta
tgtgaacgcccaccagctattcccaaaaccacattttcagcagagaatgagatggaatta
aaagttgaagaatctctcatgatgcctgcagtgtttcacacggtagcttcgcggacacag
cttgctgtggaaatgtatgaggttgcaaagaagctttgttccttttgtgaaggtctggtc
catgatgaacatcttcagcaccaaggctgggctgccataatggccaatttggaagattgc
acatattcttatcaaaagctgcttttcaagtttgaaaatgcatattcaaactatctgcaa
tccatagatgatattaagctgaaactcacacacttggggacagctgtttctataatgtcc
aagatcccactgctggagtgcctaaccagacatagttacagagagtgtttaggaagattg
gattcttctgttgggcatggaggggcagaaagtgaagaaactgaagatgagaagtctgct
gaactggtgctttcttctgatatacctagagtgcacaataaatcacttttagcctcattt
tgcaagtctgtggaacattcagccctggacagcacagatcctggaaatgtcaaagaaaat
agggaatccagtcaaaacattactgttgagaacagtaaaacttcagaagagcttagcgag
agtgatctgccttccttcaatgtctctctgttggactggataaatgttcaagatagacct
aatgatgtggaatcattagtcagaaaatgttttgattctatgagcagacttgatccaaag
atcattcagccctttttggtagaatgtcgacaaactattgccaaactagataatcagaac
atgaaggcgattaaagggcttgaggacaggctttatgcattggaccagatgatagctagc
tgcagcagactagtaaatgaacaaaaagaccttgctcagggatttttggctaatcagaag
agagctgagaacttgaaagatccttctgtgctacctgatttgtgtttgagtcatgcaaat
caactgatgattatgttaactaatcacaggaaactgttagatattaagcagaaatgtacc
actgccaaacaagagcttgcaaataatctacaagtcagattaaaatggtgttgctttgtg
atgcttcatgcggaccaagatggagagaaactgcaagccttgtttcgccttgtaacagag
ctgctagaaagagtcaagattgtagaggctctcagtactgttcctcaaatgtactgttta
gctgttgttgaggttgtaaggagaaaaatgtttataaaacactacagggagtgggctgtt
gctttaataaaagatgggaaacatctatatgaagctgaaaaggcaaaaagggaatctttt
gggaaattgtttaggaagtcttttttaaggaatcgtttgtttaggggccttgactcttgg
cctccatccttttgtacacgaaagcctcgcaggtttgacagtgaacttccagatatctta
ttaactgacttgcagtttctgcagtctttttgtccttcagaagtgcaaccattactcagg
gttcccatactttgtgactttgaacctcttcaccagcatgtacttgctctacataacctg
gtaaaaacagtacaaagtttggatgaaatgtcacagaccattacagacctgctgaatgag
caaaaggtctccaatagtcaagcatcaccacaatctgctactacaccaaggatggaaagt
gctaaaggaaccacaattgctacctcttctagaactcctccatcactcagtcttcagggt
cccttgtctcctcctgtgtgtcccccagctccattagatgaattgtctccagacagcatt
gatgctcatacatttgattttgaaacaatcgctcatccaaacttagagcaagcccttaag
caagggtctttagacttggattcactagcagaaagtccagagtcggactttatgtcggca
gtgaatgagtttgtaatagaggaaaatccatcatctcctaatatagtaagtgatccgcaa
agtccagaaatgatggtggagtccctctattcttcagttatcaatgcaatagacaataga
cgtatgcaagacacaaatatttgtgtaaaggaggattctctaaatgctcgcatggagaag
tgtagagttgttgcccaggaatcacagtttaatttaaaaaacataaaagaagacctttgt
cactttagaacatttgtacaaaaagaacagtgtgacttttcgaattctttaaaatgtaca
tcagtagaaataaggaatattatacaaacagtaaaactttcacttgaaaaagcactgaaa
gataaacatcaaaaagaattgcaatctttgaaaagtgagtatgaaactagaattgataca
ttactagaagatgttgaagaaaacaaaaaaaagattaaaaagttaacaggagacttaata
ggtcttgaagaagttttgcaaaataaagataatgaatttgcgatggtgaagaatgaaaaa
gaagccgttgtttgtctgcagaatgagaaagatcagaaattacttgcattggaaggccaa
atgaaggatcagaattgtgaaattaaagaactgagactgtcacgtgagatggtattggaa
gatctgaaaaagtttcatattgaaaatgatgaaaaaattcagcttttgagggcagagctt
cagagtttggaacaaagtcaccttaaagaattggaaaacaatctacaaatcaagcatacg
caggaatttgagaaactaatagctgagcacaaggattgtttagataagttaaaaaaagaa
aaccagcagagattcgaacaaatgcaggaatctcatgcagcagttgtccaagagaaggag
caacagatagagaagttaaaactcaaaatttctgatctgtttgacgtgaggtgcaaatta
gaagttgaacttgccatgaaggaagcagatactgatgaaatgaagattttgttggaagaa
agcagaactcagcaacaggagatcctaaagtcccttattaataaggaaactgaacattta
agaaaggagttagataacttaaaccataagattcaagttaataatgatgaatatcaagtg
ggcctagtagagctaagaactttaatgacaattgagaaagatctgtgcatttcagaatta
gtggacagacacgaagaagaaacaaatgttcttaaaattgaattaaacagagtaacctct
ttacatcaaaaagcttttgaagtagaaaaaagtctcaaagaacaaataatagaactacag
agtaagttagaagtggaagcaaatgccctagaaaagcaaaaagaggaaaaattggctgtg
tgtgaacagaaggacaaatttgaagctgttatccataatcttgaggaggaaaaagaactg
ttaataactaaccaagaacaggaaagaaaactacttgttcaaaggctcagtagtgaaaaa
gaggatgcaatacgtataacccttaaggagtctgaattacagagggaagctgttgaaaaa
gaactcttggaaaaaatacaactacttgagatgcaagtaaatcagagtccttccattgaa
ttatctgctgcatcaagcttggttattgagcttcaagaaaaacttgaggaagagaaaata
aaatttttggagcaacttgaagagcaagagaaaagaaagaatgaagaaatgcaaaacttt
agaatgtctctgactgcagaacagcagaccaattttaacaccgtgctgacaagagaaaaa
atgaagaaagaaaacataataaatgatcttagtgacaaattaaaaacaataacccaacag
caggaaagggataaggatttgattgaaacactttctgaagatcgtgctcgattacttgaa
gagaagaaaaaacttgaagaagtgaataagatgagaagcagtaattttattccatcagct
tatttacctacagcttcagaatcttgtgaagcctgtgcacctgatctcccagctgaaaca
gaaagagtggcttcagagattacagatgaaggaaggctggattcagcaatggaaactagc
atgatggctgtacatgaaaacatccatatgttgtctgaagaaaaacagaggataatgttg
ttagaaagaacattacaacttaaagaagaggaaaataagcgattaaatcaaagattgatg
tcccaaagcatgtcttcagtgtcttcaagacattctgaaaaaatagctatcagagatttt
caggttggcgatttggttctcattatcttggacgaacgccatgacaactatgtattattt
actgtcagtccaacattgtatttcttacattcagagtctcttgctgcgctggatctgaag
ccaggtgagtgtgcttcaggtgcatctagaagaccttgggtgctaggaaaagtaatggaa
aaggaatattgccaggcaaaaaaggcacaaaacagatttaaagttcctttaggtacaaaa
ttctacagagtgaaagcagtgccgtggaacaaaaaagtataa
DBGET
integrated database retrieval system
