Trachemys scripta elegans (red-eared slider): 117873779
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Entry
117873779 CDS
T07347
Symbol
COL14A1
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tst00535
]
117873779 (COL14A1)
Proteoglycans [BR:
tst00535
]
Extracellular matrix (ECM) proteoglycans
Others
117873779 (COL14A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
vWA_SIBA-E
VWA_3
Motif
Other DBs
NCBI-GeneID:
117873779
NCBI-ProteinID:
XP_034619421
LinkDB
All DBs
Position
2:259258456..259429550
Genome browser
AA seq
1887 aa
AA seq
DB search
MKVCRYKIQSWFLLAFLAVTVHLISHVQGQVAPPTRLRYNLITHDSVQISWKAPKGKFTG
FKLLVTPSSGGKTNQLTLQNSATKAIIQGLIPDQSYEVQIITYNKDQESKPAQGQFRIKD
LERKKETSSKSKVKGTEGTGGSKPSPSTEESQFTCKTPAIADIVILIDGSWSIGRFNFRL
VRLFLENLVGAFNVASEKTRIGLAQYSGDPRIEWHLNAFSTKDAVLDAVRNLPYKGGNTL
TGLALTFILENSFKPEAGARPNVSKIGILITDGKSQDDVIPPAKNLRDAGVELFAIGVKN
ADINELKEIASEPDSTHVYNVADFNFMHTIVEGLTRTVCSRVEEQEKEIKGTFVATLGAP
TDLVTSEVTARGFHVSWTHAPGKVEKYRVVYYPTRGGQPEEVVVDGSVSTAVLKNLMSLT
EYQIAVFAIYISAASEGLRGTETTLALPTASNLQLYNVSQSSMKAKWNGVAGASGYMILY
APLTEGQASDEKEMKIGEALTDIELDGLLPNTEYTVTVYAMFGEEASDPLTGQETTLPLS
PPRNLRFLDIGHSTSRITWEPVSEKVNGYRIMYVKTDGTETNEVEVDRISTYTLKRLTSL
TEYTVAIFSLYDEGQSEPLTGSFTTKKVPAPQYLEIDEASTDSFRVNWKPISSDIARYRL
AWTPLNGGASEEVVLDGDKDTHVVEGLLPDTEYEVSLLAVYSDESESDVVAVLGTTLART
TTVSTTLATSTTATSRPTTAVFRTGIRNLVIDDETTSSLRVTWDISDYNVHQFRVTYLTS
KGDRAEEVVMVPGRQNNLLLQPLLSDTVYKVTVTPIYSDGEGVRVSAPGKTLPLSAPRNL
RVSDEWYNRLRISWDAPPSPTMGYRIVYKPINIPGPALETFVGDDINTILILNLFSGTEY
SVKVFASYSTGFSDALAGTAKTLYLGVTNLDTYQVRMTSVCAQWQLHNHATAYRIVTESL
VDGKKKEVTLGGGTPRHCFFELMPGTEYKISVYAQLQEIEGPGVSIMETTLPFPTQPPTS
PSTTAPPPTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFNKIIGFLYSTVGALDRIGPDG
TQVAIAQFSDDPRTEFKLNVYKTKETLLEAIQQIAYKGGNTKTGKAIKHAQEALFTTASG
IRRGIPKVLVVITDGRSQDDVNKVSREMQLDGFSIFAIGVADADYSELVNIGSKPSERHV
FFVDDFDAFKNIEDELITFVCETASATCPLVYKDGNSLAGFKMMEMFGLVEKEFSTVEGV
SMEPGTFNAYPCYRLHKDALVSQPTKYLHPEGLPSDYTITFLFRILPDTPQEPFALWEIL
NEKYEPLVGVILDNDGKTLIFFNYDYKGDFQTVTFEGLEIKKIFYGSFHKLHVVISKTTA
KIIIDCKQVSEKTINAAGNITSDGIEVLGRMVRSRGQRDNSAPFQLQMFDIVCTTSWANR
DKCCELPALRDEESCPSLPHSCSCSEFSKGPLGPPGPPGGPGVRGPKGHRGDQGPKGLDG
PRGEAGAPGPQGHPGPQGPSGLSIQGLPGTPGEKGEKGDRGLPGQQGVPGASGSPGRDGT
QGQRGLPGKDGPTGPQGPPGPVGIPGAPGVPGVMGNTGPQGGVGPPGAPGAKGERGERGD
IQSQAMVRAVARQVCEQLIQGHMARYNSILNQIPSQSVSERTIPGPPGEPGRPGSPGSQG
EQGAPGRPGFPGNPGQPGRPGERGLPGEKGERGNPGVGTQGPRGPPGPAGPSGESRTGSP
GPPGSPGQRGPPGHTGVPGPQGPSGQPGYCDPSSCAGYDVGGGYGDTTDQDIPVVQLPHN
SYQIYDPEELYDGEQQHYIVHGSYPQPAQYPQSSYPEPHLAQPEFTPVQEEMDAIEMRSP
GISRFRRQISKRSVNAPIRKRAIEKNT
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttgtcgatacaagatacagagctggttcctcttggcttttttagcggtcacg
gttcatctcatcagtcatgttcagggtcaagtggccccaccaacaagactaagatataat
ctaatcactcatgacagtgtacagatttcatggaaagcccctaaagggaaatttactgga
tttaagcttcttgtcactccaagttcaggtggaaaaaccaatcaactaactcttcaaaac
agtgcaaccaaagcaattattcaaggtcttattccagatcaaagctacgaagttcagatt
attacatacaataaagaccaagagagcaagccagcacaagggcagttcagaattaaagat
ctagaaagaaagaaggaaacatcaagtaaatccaaggtcaagggtacggaaggtacaggt
gggagtaaaccatctccatctacagaagaaagtcagtttacatgtaaaactccagcaatt
gcagacattgtgatcctgatagatggctcatggagtattggcagattcaacttcagactt
gtccggcttttcctggaaaatctggttggtgccttcaatgtggcttctgagaaaacaaga
ataggtcttgctcagtacagtggggatccccgaattgaatggcatctgaatgcctttagc
acaaaggatgctgttttggatgcagtccgtaatctgccatataagggagggaatacatta
acaggtcttgccttaacttttattttggagaacagctttaaacctgaagcaggtgcaaga
cccaatgtgtccaaaattggtatattgatcacagatggaaaatcccaagatgatgtcatc
ccacctgctaaaaatctgcgtgatgctggtgttgaattgtttgctattggtgtgaagaat
gcagatataaatgaactcaaagagattgcctctgaaccagacagtactcatgtctacaat
gttgctgactttaacttcatgcacaccattgtagaaggtcttacgagaacagtgtgttca
agagtggaggaacaggaaaaggaaatcaaaggaacatttgttgccactcttggagctcct
acagatttggtcacatctgaggtaacagccagaggattccatgttagctggacccatgca
cccggcaaggtggaaaaatacagagttgtgtactatcccactagaggaggccaaccagag
gaggtagtggtggatggaagtgtatcaacagcagttctaaaaaacctgatgtcgctaact
gaatatcagatagcagtgtttgctatatatataagtgctgcaagtgagggtctccgtggt
actgaaaccacacttgctttgcctacggcatcaaatctacagttgtataatgtgtcacag
agcagcatgaaagcaaagtggaatggagtagcgggtgcctctggttacatgatcctatat
gctccccttacagagggacaggcctcagatgaaaaggagatgaaaattggagaggccttg
accgatattgaactggatgggttattgcctaacacagaatatacggtcacagtttatgcg
atgtttggagaagaagctagtgaccccctgacaggacaagaaacaacattgcctttaagt
ccacccaggaacttgagatttttggacattggacacagcacttccaggataacatgggaa
cctgtttccgaaaaagtaaatggttatcgtattatgtatgttaaaactgatgggacagaa
accaacgaggtggaagttgatcgcatttcaacatacaccctgaaaaggctgacatccctt
acagaatatactgttgccattttttccctctatgatgaaggacagtctgagccgctgact
ggcagctttactacaaaaaaagttccagccccacagtatttggaaatagatgaagcatca
acagatagttttagagtcaattggaagcccatctcctctgatattgctcgctacagattg
gcatggaccccactgaatgggggtgcatctgaagaggttgtcttagatggagacaaggac
acgcatgttgttgagggtttgttacccgatacggagtatgaagtttctttgctggcagtt
tacagtgatgaaagtgaaagtgatgttgttgccgttcttggaactacacttgcaaggacc
actacagtatctaccacccttgctactagtactactgcaacctccagacccacaactgca
gtttttcgaacaggaatcagaaaccttgttatagatgatgaaaccacatcaagcttgagg
gtgacgtgggacatttcagactacaacgttcaccagttcagagtgacctacctcactagt
aaaggtgatcgtgctgaggaagtggtgatggtacctggaagacaaaacaatcttcttctt
cagccgctgctctcagataccgtatacaaagttactgtcactcccatctattctgatggg
gaaggagtccgtgtctcagctcctggaaaaaccttgcctctttctgcccccagaaattta
agggtctcagatgagtggtacaaccgattacgtattagctgggatgcccctccgtcacca
acaatgggttacaggattgtctacaaacctatcaatatccctggaccagcactagagacc
ttcgtgggagatgatattaacaccattctcattctaaatctgttcagtggaactgagtat
agtgttaaagtatttgcttcatactcaacaggcttcagtgatgccctagcaggcacagcc
aaaacattgtacttgggcgtgacaaatctggatacatatcaagtgcgcatgactagtgtt
tgtgcccagtggcagcttcacaatcatgctactgcatacaggatagtgacagaatcgctt
gtcgatgggaaaaagaaagaagtaacccttggtggagggacacctagacattgcttcttt
gagctcatgcccggcactgagtataaaatcagtgtctatgcccagcttcaggagatagaa
ggccctggagtaagcatcatggaaactacattaccatttccaactcaaccaccgacttct
ccttcaacaacagctccaccacctacaatccctcctgcaaaagaagtttgcaaagctgcc
aaggctgacctggtgttcctagtggatgggtcatggagtattggagatgataatttcaat
aaaataattggattcctgtatagcactgttggagctctggacagaattggtcctgatgga
actcaggttgcaatagctcagttcagtgatgatcccagaacagaatttaaactgaatgtg
tacaaaacgaaagagactcttcttgaagccattcagcaaatagcgtacaaaggaggaaac
accaaaacaggcaaagcaattaagcatgcacaggaggccttgtttaccactgcctcgggc
ataagaaggggtatccctaaggttttggtggtcattactgatgggcgatcacaggatgat
gtgaacaaagtctccagagagatgcaactagatggtttcagcatttttgctattggtgtg
gcggatgcagattattcagaattagttaacattggcagcaagcctagtgaaagacatgtc
ttctttgtggatgattttgatgcctttaagaatattgaagatgagctgatcacttttgtc
tgtgaaactgcatcagcaacctgcccattggtatataaggatggcaacagtttagcagga
tttaaaatgatggaaatgtttggtttggttgaaaaggagttttcaacagtggaaggagta
tctatggaacctggtacttttaatgcttatccgtgttacagactgcataaagatgcctta
gtttcccagcctaccaaatacttgcaccctgaggggctgccttcagactacaccattact
tttctcttccgtatactccctgacacaccccaggagccatttgctctgtgggagatttta
aatgaaaaatatgagccacttgttggagttattttggacaatgatggtaaaactctgatt
ttctttaattatgactacaaaggggattttcaaactgttacttttgaaggccttgaaata
aagaaaatattctacggaagtttccataagttacatgttgttatcagcaagactacagcc
aaaattattattgactgcaagcaagtgagtgagaagacaattaatgcagcaggaaatatt
acttctgatgggatagaagtgctaggaagaatggtcagatcccgaggacaaagggacaac
tctgcaccattccagttacagatgtttgacattgtttgtaccacctcctgggccaataga
gacaaatgctgtgaacttcctgccttgagagatgaggaaagttgcccatctcttcctcat
tcttgctcctgttccgaatttagcaaaggaccactcggacctcctggaccaccgggtggt
ccgggtgtcagaggcccaaagggtcatcgtggtgatcaaggcccaaagggcctagatgga
cctcgtggtgaagctggtgctccaggaccccaagggcatccaggaccccaagggccaagt
ggactttctattcaagggcttccaggaacaccaggtgaaaaaggagagaagggtgatcgt
ggtctccctggtcagcagggtgtcccaggagcatcaggatcaccgggacgggatggaact
caaggtcaaaggggtctgcctggcaaagatggacccacagggccccaaggtcctcctggg
ccagtgggaatacctggtgctcctggtgttccaggggttatgggaaacacggggccacaa
ggtggtgttggaccccctggtgctcctggtgcaaagggggaaaggggtgaacggggtgac
attcagtcccaggcaatggttcgtgcagttgctcgtcaggtgtgtgaacagctcatccaa
ggtcacatggccagatataattcaattctgaaccagattccaagtcagtctgtctcagaa
cgaactattccaggacctcctggtgagccaggtcgaccaggatctcctgggtcacaggga
gaacaaggagcaccaggaagacctggatttccaggcaatcctgggcagccaggaagacca
ggagaaagaggtttaccaggcgagaaaggagaaagaggcaacccgggtgttggaacacaa
gggcccagaggcccaccagggcctgcaggaccttctggtgaaagtcgaactggcagccca
gggccaccaggatccccaggccaacgaggcccacctggtcatacaggtgttcctggtcca
cagggtccttctggccaacctggctactgtgatccttcttcttgtgctgggtatgatgtg
ggaggtggatacggtgatacaactgatcaagacatccccgtagttcaattgccacataac
tcctaccaaatctatgacccagaggaactttatgatggtgagcaacagcactatatagtt
catgggtcctacccccaaccagcccaatatccccagtcctcctatccagaacctcatctt
gctcaaccagagtttactcctgttcaggaagagatggacgccatcgaaatgagatctcct
ggaattagtcgtttcagaaggcaaatatcaaaaagaagtgtgaatgctccaatacgcaag
agggcaattgaaaaaaacacttaa
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integrated database retrieval system
