Trachemys scripta elegans (red-eared slider): 117874106
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Entry
117874106 CDS
T07347
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
tst03015
mRNA surveillance pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117874106 (EIF4A3)
09122 Translation
03013 Nucleocytoplasmic transport
117874106 (EIF4A3)
03015 mRNA surveillance pathway
117874106 (EIF4A3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117874106 (EIF4A3)
03041 Spliceosome [BR:
tst03041
]
117874106 (EIF4A3)
03009 Ribosome biogenesis [BR:
tst03009
]
117874106 (EIF4A3)
03012 Translation factors [BR:
tst03012
]
117874106 (EIF4A3)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117874106 (EIF4A3)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117874106 (EIF4A3)
mRNA cycle factors
Stress granule specific factors
117874106 (EIF4A3)
Spliceosome [BR:
tst03041
]
Complex C
Other components
EJC/TREX
117874106 (EIF4A3)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
90S particles
Helicases
117874106 (EIF4A3)
Translation factors [BR:
tst03012
]
Eukaryotic type
Initiation factors
eIF-4
117874106 (EIF4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117874106
NCBI-ProteinID:
XP_034619811
LinkDB
All DBs
Position
3:complement(2036028..2052566)
Genome browser
AA seq
409 aa
AA seq
DB search
MSGAAGAAGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPS
AIQQRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAVQI
QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK
MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF
TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI
HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgcggcaggcgcggcgggctcggcccgcaagcggctgctgaaggaggaggac
atgaccaaggtggagttcgagaccagcgaggaggtggacgtgacccccaccttcgacacc
atggggctgcgcgaggacctgctgcgcggcatctacgcctacggctttgagaaaccatca
gctattcaacagagagcgatcaagcagattatcaaaggaagagatgtcattgcacagtca
caatctggaacaggcaaaacagcaacattttgcatctctgttctacagtgtttggatatt
caggtccgtgaaacccaggcattgatcttagcaccaactagggagttggcagtacagatt
caaaagggccttcttgctcttggtgactacatgaatgtgcagtgtcatgcctgtattgga
ggcacaaatgttggtgaagatatccggaaactggattatggacagcacgttgttgctggc
acaccaggccgtgtgtttgatatgattcgtcgtcgaagtttaaggactcgtgccatcaaa
atgttggttttggatgaagctgatgagatgctcaataaaggttttaaagaacagatttat
gatgtgtacagatacctgcccccagctactcaggtggttctgatcagtgctaccttgcct
cacgaaatcctggagatgaccaataaattcatgactgacccaatccgcatcttggttaaa
cgtgatgaattgactctggaaggaatcaaacagttttttgtggccgtggaaagggaagaa
tggaagtttgatacgctgtgcgatctgtacgacacactcactatcacgcaagctgtcatc
ttctgtaacaccaagaggaaggtagactggctaacagagaagatgagggaagccaacttc
acggtatcatcaatgcatggtgatatgccacagaaggagagagaatccatcatgaaagag
ttcagatcgggggcaagccgtgtgcttatttctacagatgtttgggccaggggcttggat
gttcctcaggtgtccctgatcattaactacgacttgcccaacaacagagaactgtatata
cacagaattggtagatcaggtcggtatggccgaaaaggtgttgccatcaactttgtaaag
aatgacgacatccgtatcctgcgtgacattgaacagtactactctacccagattgatgag
atgcccatgaatgttgctgatcttatttaa
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integrated database retrieval system
