Trachemys scripta elegans (red-eared slider): 117874331
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Entry
117874331 CDS
T07347
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117874331 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tst03400
]
117874331 (MSH6)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117874331 (MSH6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
117874331
NCBI-ProteinID:
XP_034620214
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Position
3:26166759..26195522
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AA seq
1353 aa
AA seq
DB search
MSRQSTLLRFFPKARAPGVGPAQAPSPPAAARQRGWASSEAAGDEAALAPGGGAAEMGQS
GGVEAQGARKGRTKAARAPSVSCDYSPGDLVWAKMEGYPWWPCLVYNHPTEGTLVRAKGK
SSRVHVQFFDDSPTRGWVSIKYLKPYKGSAVRETQRGGMFYSSKPEIKRAMEMADDAMRK
DKTKRLELAVCNEPSDTEDEEEMEVSESASGNSEDYDSEEEEKKKKLLASKWRSGGKAKK
RRVVDSDSDNEGSDEEFKPDAKDEASSDEASSGMGEGESASSETDTKLDVDSPVTVPSKR
KRETDRKPAKRNSLENDLSEAPKRAVTVSLETKSRLTSFAAPENFESQPNVSSSAIWEHD
KLEWLQEGKKRDGCRRRQSDPHYDPCTLHVPEDYLNKCTPGMRKWWQLKSQNFDAVIFYK
VGKFYELYHMDAVTGVNELGLIFMKGIWAHSGFPEIAFGRFSDVLVQKGYKVVRVEQTET
PEMMEARCRSLAHPTKFDRVVRREICRIITKGTQTYSVLDGDPSENLNKYLLSVKEKVED
SSGHHRAYGVCFVDTSVGKFYVGQFPDDRHCSRFRTLVAHHTPVQILFEKGNLSADTHKI
LKGSLSSSMQEGLISGSQFWNASKTLKTLIEEEYFEDKQNVDNRFILPPVIKSMTSESDS
LGLTPGENCELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDTDVVKAKGSSSFFAK
TNQRMVLDGVTLANLEILQNGTTGTTEGTLLERIDICCTPFGKRLLKQWICAPLCNPHTI
NDRLDAVEDLLAVPDKMFEVSELLKKLPDLERLLSKIHSIGSPLKSETHPDNRAIFYEET
RYSKKKITDFLSALEGFKVMLETIGIMEEIAADFKSKILKQLVTLKSKNPEGCFPDLSTE
LKRWDTAFDHNEARKTGVITPKAGFDPDYDKALKDIIDIEENLREYLDKQRKRLGFKAML
YWGAGKNRYQMEIPENAISHNLPEEYELKSTRKGYKRYWTKEIEKMLAEMVNAEERRDAA
LKDCMRRLFHNFDKNSKDWQTAVECFAVLDVLMCLANYSQGGDGPFCRPVILLPEQNTPP
FLELKGSRHPCITTTFFGDDFIPNDIVIGSKNEDEDRNSEAYCVLVTGPNMGGKSTLMRQ
AGLLAIMAQLGCYVPAEACRLTPIDRVFTRLGASDKIMSGESTFFVELSETSSILRHATE
HSLVLVDELGRGTATFDGTAIASAVVKELAENIKCRTLFSTHYYSLVEDYSHSAAVRLGH
MACMVENESEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEEVIQKGHRKAQDFEKV
TLSLRLFRHLCLVAENAAGDKAVPKLMTVINNL
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaaagcaccctgctccgcttcttccccaaggcccgggcgccaggcgtcggt
ccggcccaggccccttctcctccggccgcagcgaggcagaggggctgggcctccagcgag
gcagccggggatgaggcagccctggctcccggcggtggcgcggcggagatgggacaatcc
ggcggagtcgaggcccagggggcgaggaaggggagaaccaaggccgcccgggcccccagt
gtctcctgtgattattcacctggtgatttggtttgggccaagatggaagggtacccctgg
tggccatgtcttgtatacaaccacccaactgaaggaactctagtcagagcgaaaggaaaa
tcctctcgtgtacatgtacaattttttgatgatagcccaacaaggggctgggttagcatt
aaatacttaaagccatataaaggctcagcagttagggaaactcagaggggaggtatgttt
tacagttcaaagcctgaaattaaaagagcaatggaaatggcagatgatgctatgcgcaaa
gataaaactaagcggcttgaactggcagtgtgcaatgaaccttcagatactgaagatgag
gaagagatggaggttagtgaaagtgcttcgggcaacagtgaagattatgatagtgaggag
gaggagaaaaaaaaaaagctgctggcaagcaagtggagaagtggtgggaaagccaaaaaa
cgaagagtggtggactctgacagtgataatgaaggttcagatgaagagtttaagccagat
gctaaagatgaagcaagcagcgatgaagcaagcagcggaatgggcgaaggtgaatctgcc
agttctgagacagacacaaagctggatgtagatagtcctgtgacagtcccttctaaacga
aagagagaaactgaccgcaaacctgctaaaaggaatagcttggaaaatgacctttctgaa
gcacccaaaagagcagtaactgtttcattagaaaccaagtcaaggctgacctcttttgca
gcgcctgaaaactttgagtctcagccaaatgttagcagttctgctatatgggaacatgat
aaacttgaatggcttcaggaagggaaaaagagagatggatgtagaagaagacaaagtgat
cctcattatgacccatgtaccctccatgtaccagaggactaccttaacaagtgtacccca
ggaatgcggaagtggtggcagctaaagtctcagaactttgatgctgtaatcttctacaaa
gtcgggaagttctatgagttgtatcatatggatgcagtcactggtgtaaatgaactggga
ctgatatttatgaaaggtatttgggcccattcaggttttccagaaattgcatttggcaga
ttctctgatgttctggtacagaagggttacaaagtagtccgggttgagcagacagagact
cctgagatgatggaggcacgctgcagatccctggcccacccaacaaagtttgatagggtt
gtacgcagagaaatatgcaggataattaccaaagggacacagacctacagtgttctggat
ggagacccttctgaaaaccttaataaataccttctcagtgtaaaagaaaaagttgaagac
tcttctggccaccaccgtgcatatggtgtctgttttgttgacacatcagtaggaaaattt
tatgtgggccaatttccagatgaccgccactgctcacggtttagaactttggtggcacac
cacactcctgtgcagatcctgtttgagaagggaaatctgtctgcagacacacacaagata
ttaaaaggctcactctcttcttccatgcaagaaggcttgatctctggctcccagttctgg
aatgcatctaaaacactgaaaactctaatcgaagaagaatactttgaggataagcagaat
gttgataataggtttattctgcctcctgtgatcaaatccatgacctcagaaagtgactct
ctgggtcttactcctggtgaaaactgtgagttagctttgtctgctctcggtggatgtgtc
ttctacctcaagaaatgccttattgaccaggagctcttatctctggcaaactttgaagag
tatgttcctgtggacactgatgttgtcaaagctaaaggatcaagcagtttctttgctaaa
actaatcagcggatggtgctggatggggtgacactagcgaacttggaaatcctgcagaat
ggaactactggcaccacagaaggcacattactggaaaggattgacatttgttgtacccct
tttggaaagcgactcctgaaacagtggatatgtgcgcccctctgtaatccccacactatc
aatgatcgtttggatgcagttgaagatcttctggcagttcctgataaaatgtttgaagtt
agtgaacttctgaagaaacttccagaccttgaaaggctcctgagcaaaattcacagtatt
ggatcaccacttaaaagtgagactcatccagacaatagagctatcttttatgaagaaacc
agatacagcaaaaaaaaaatcactgacttcttgtctgcgctggaaggatttaaagtaatg
cttgagaccatagggattatggaagaaattgctgctgatttcaaatctaaaatacttaag
cagttagtcaccctgaagtctaaaaatccagagggttgtttcccagacctgagtacagaa
cttaaaagatgggatactgcttttgaccataatgaggctcgaaagactggagtgattact
ccgaaggctgggtttgaccccgattatgataaagcactaaaggatattatagacattgaa
gagaatcttcgggagtatttggataaacaacgcaaacgacttggattcaaagccatgctg
tattggggagcaggcaaaaaccgctaccaaatggaaatcccagaaaatgcaatctctcac
aatttgcctgaggaatatgaattgaagtccaccagaaagggttataaacgttactggacc
aaggagatagagaagatgctggcggagatggtcaatgccgaagaacggagagatgcagcg
ctgaaagactgtatgaggagactgttccacaattttgataaaaatagcaaagactggcaa
acagcagtggaatgctttgctgtattagatgtcttgatgtgccttgctaactatagtcaa
ggtggtgatggaccattctgccgacctgtaattctactgccagaacagaatactccaccc
ttcttggagcttaaaggttcacgccatccatgcattacaacaacatttttcggggatgat
tttattcctaatgatattgtgataggttccaagaatgaagatgaagaccgcaatagtgaa
gcctactgtgttttagtaactggcccaaacatgggtggcaaatctacactaatgagacag
gctggccttttggcaataatggctcagttgggatgctatgtacctgctgaagcttgcagg
cttactcctattgacagagtatttacaagactaggtgcttcagacaaaattatgtcagga
gagagtaccttttttgttgagctgagtgagacttccagcatactccggcatgcaacagag
cattcccttgtgcttgtggatgaactaggaagaggcacagctacttttgatggtacagct
atagcaagtgcagttgttaaagaacttgcagaaaatataaagtgtcgcacgcttttttcc
acacactattattcattagtagaggactattcacacagtgctgctgtgcgactgggccat
atggcatgtatggttgaaaatgagagtgaagatccaagccaggaaactattacattcctc
tataaattcattagaggagcttgtcctaaaagctatggtttcaatgcagcaaggcttgct
aatattccagaggaagttattcagaaaggtcacagaaaagcacaagactttgagaaagtt
acactctcactgagactgtttaggcacctttgcctggtggctgagaatgcagcaggagat
aaagctgttcctaaactgatgactgtaatcaataatctgtaa
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integrated database retrieval system
