Trachemys scripta elegans (red-eared slider): 117874356
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Entry
117874356 CDS
T07347
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117874356 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tst03400
]
117874356 (MSH2)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117874356 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
117874356
NCBI-ProteinID:
XP_034620294
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Position
3:complement(32399738..32508049)
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AA seq
939 aa
AA seq
DB search
MASAAPVPAGESLWPEGSSAEGGFVRAVLALPDKPDTTVRFFERGEHYTVHGGDAQLAAR
ELFRTRGVIRLLAGGPGNQKLESVVLSKMNFESFLRDLLLVRQYRVEIYKNKAGSKSTKE
NDWYLAYKGSPGNLAQFEEILFGNNDMSTAIGVVGVKLYTADGQRIVGVGYVDTTLRKLS
VCEFPDNDQFSNLEALLVQIGPKECVLPGGETAGDMGKLRHIIQRGGIMITDRKKAEFTT
KDIVQDLNRLLKSKKEEQVTSATLPEIEKQVAVSSLSAVIKYLELLSDESNFGQFELTSF
DLSQYMILDNAAVRALNLFQSSVENANNTQSLVGLLNKCKTPQGQRLVNQWIKQPLTDKN
RIEERLNLVEAFVVDTELRQCLQEELLRRFPDLNRLAKKFQRQVATLQDCYRMYQAINQL
PNVVQALEKHEGTHQMLLLAVFVMPLNDLNSDFSKFQEMIETTLDMNKVENHEFLVKASF
DPNLTELREKMNKLEESMQTLLKTAARELGLEAGKNIKLDSNSQLGHYFRITCREEKVLR
NNAKYKILDTQKNGVKFTNSKLSSFNEDYIRSREEYEEAQEAIVKEIINIASGYVEPIQT
MNDVIAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGSRHPCIEVQDDIAFIPND
VNFEKGKQMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCDSAEVTIVDCILARVGA
GDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKI
CAFCMFATHFHELTALANQVPTVNNLHVTALTTDEMLTMLYRVKKGVCDQSFGIHVAELA
AFPKHVIESAKEKALELEEFQTIGKPEESEGEPAAKRRYREKEEGEKIIQEFLCKVKALP
LRDMSEEDIRTKLKQLKAEVLAKNNGFVNEIVSRTKVTP
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggcgcctgtccctgcgggggagtcgctgtggccggagggctcgagcgcc
gagggcgggttcgtgcgcgcggtcctggcgctgcccgacaagcccgacaccaccgtgcgc
ttcttcgagcgcggcgagcactatacggtgcatggcggggacgcgcagctggccgcccgc
gagctcttccgcacccgcggcgttatccggctactggcggggggcccaggcaatcaaaaa
ctcgagagtgttgtgcttagtaaaatgaactttgaatcttttctgagagatctacttctg
gttcgtcagtacagagttgaaatttacaagaacaaagcaggaagtaaatctaccaaagag
aatgactggtatttggcatacaagggttctccaggtaaccttgcccagtttgaggaaatt
ctttttggcaataatgacatgtcgactgccattggcgttgtgggtgttaagctatatact
gctgatggacaaagaatagttggagttgggtatgtcgacactacgctcaggaagctgagt
gtctgtgagtttccagataatgatcaattctcaaaccttgaagctctgctggttcaaatt
ggacctaaggaatgtgtgctaccaggaggagagactgctggagatatgggaaaactacga
catatcattcaaagaggaggaatcatgattacagaccgaaaaaaggctgaattcacaaca
aaagatattgtgcaggatctcaaccgcttgctaaaatcaaaaaaggaagagcaagtgact
agtgcaacattaccagagatagaaaaacaggttgctgtttcatccttgtcggcagttatc
aagtatttagagctcttgtcggatgaatctaactttggacaatttgaattgactagcttt
gacctcagtcaatatatgatactggataatgcagctgttcgagcccttaaccttttccag
agttctgttgaaaatgccaacaatacacagtcattggttgggttattaaataagtgcaaa
actcctcaaggacaaagactggttaatcagtggatcaaacagccacttacggacaagaac
agaatagaagaaaggttaaatttggttgaggcctttgtggtagacacagaactacggcag
tgccttcaagaagagcttctacgtcgttttccagatctcaaccggctagccaagaaattt
caaagacaagtagcaaccctgcaggattgttaccgaatgtatcaagctattaaccaactg
cctaatgttgtacaggcactggaaaaacatgaaggaacacaccagatgttgttgctggca
gtatttgtaatgcctcttaatgatctcaactctgacttctccaagtttcaggaaatgata
gaaacaactttagacatgaacaaggtggaaaatcatgaattccttgtgaaggcttctttt
gatcctaatctgaccgagttgagagagaagatgaacaaactagaggagagcatgcagact
cttctaaagactgcagccagagaactaggcttggaagctggcaagaacatcaaattggac
tccaattcacagttaggacattacttccgaattacctgccgggaagaaaaagtccttcgg
aacaatgcaaaatataagatcttagatacccaaaagaatggtgtgaaattcacaaacagt
aaattgagctccttcaatgaagactacataagaagtagagaagagtatgaagaggctcag
gaagccattgttaaagaaatcattaatattgcttcaggatatgtagagccaatacagaca
atgaatgatgtgatagctcagttagatgctgttgtcagttttgctcatgtatcaaatgga
gcacctgtgccgtacgtccgtccggtcattctggaaaagggacaaggaagaattgtgctg
aaaggttccagacacccttgcattgaagttcaagatgacatagcattcatccccaatgat
gttaactttgagaagggcaagcagatgttccatattattactggtcctaacatgggaggg
aaatcaacatacattcgccaggctggagtgatagttcttatggcccaaattgggtgcttt
gtaccatgtgactcagcggaagtgactattgtggattgtattctggctcgggtaggagca
ggagacagtcagttgaaaggtgtctcgactttcatggcagaaatgttagaaactgcatca
attcttcggacagcatctgaaaactctttaataatcattgatgagttgggaagaggaact
tcaacatatgatggatttgggttggcatgggctatttcagaatatatcgccagcaaaatt
tgtgccttctgtatgtttgctacgcattttcatgaactgacagcacttgctaaccaagtg
ccaactgtgaataatttacatgttacagcactaaccactgatgagatgctgactatgctt
taccgtgtcaagaaaggtgtctgtgatcagagttttggaatacatgtagcagagcttgct
gcttttccaaagcatgtaatagagagtgcaaaagagaaggctctggagctagaggagttc
caaactattggaaaacctgaggaatctgaaggagaaccagcagctaagagacgctacaga
gaaaaagaggaaggtgaaaaaataattcaggaattcctttgcaaagtgaaagcattgccc
ttgagagacatgtcagaggaggacattagaaccaaactgaaacaattgaaagctgaagtg
ctggcaaagaacaacggttttgtgaatgaaattgtttcccgaacaaaagttactccatga
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