Trachemys scripta elegans (red-eared slider): 117874500
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Entry
117874500 CDS
T07347
Symbol
NVL
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117874500 (NVL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tst03009
]
117874500 (NVL)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
117874500 (NVL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Nucleolin_bd
AAA_lid_3
RuvB_N
AAA_16
AAA_5
AAA_22
AAA_14
AAA_2
TIP49
AAA_28
Mg_chelatase
NPHP3_N
AAA_33
RNA_helicase
nSTAND3
AAA_17
NACHT
ABC_tran
Viral_helicase1
AAA_18
Rad17
IstB_IS21
TsaE
AAA_3
Zeta_toxin
Sigma54_activ_2
Parvo_NS1
DUF815
ATPase
CSN4_RPN5_eIF3a
Motif
Other DBs
NCBI-GeneID:
117874500
NCBI-ProteinID:
XP_034620558
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All DBs
Position
3:complement(49505595..49571231)
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AA seq
859 aa
AA seq
DB search
MRGRAGSFADPRLKQRIKQYLSSNKCGRYVDIGILAADLQKTYSAEYGRRKRNAFRIQVE
KVFGIISNEREFEDLTTLENEHVAKRARHRREGNEDVESYTDDSDDDDYSEPLSTNHLNS
SLLTLYRKGDPDSLPATPKNEPTETSTPAQVTAPRTSALPSGTPLDTRISEGGWFIDKTP
GRKEDNFLIDLSEEEEERKQISEKSKDLSFLESEGKKTKSKRRKRRKEESQDVDEEIESV
LRKQKVKTKGPELQFPLVKFDDVGGSDETLKEVCKMLIHVRHPEVYNHLGVVPPRGFLLH
GPPGCGKTLLAQAIAGELELPMLKVAATEIVSGVSGESEQKLRELFEQAVSNAPCILFID
EIDAITPKREVASKDMERRIVAQLLTCMDDLNNLAATAQVLVIGATNRPDSLDPALRRAG
RFDREICLGIPDEAARERILQTLCRKLRLPESFDFHYLAHMTPGYVGADLMALCREAAMC
TVNRVLIKLEEQKWKGVQAGEARTEQNLKTGTEALVEQDTKHSELPAKDELQRLLELLKE
QDPLLEKQLQKLCIEMNDFIVALSSVQPSAKREGFVTVPDVTWADVGALEDIREELTMAI
LAPVRNPEQFKSLGLTAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG
ESERAVRQVFQRARNSAPCVIFFDEVDALCPRRSDREAGASVRVVNQLLTEMDGLENRQQ
VFIMAATNRPDIIDPAILRPGRLDKTLYVGLPPPVDRLAILKTITKDGTRPPLDVDVNLE
EIAYDQRCDCYTGADLSALVREASVCALRQEMALQNGKSKKGEIKISQKYFEEAFKKVKS
SISRKDQAMYDELRQSLSR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgcggggccgcgcggggagctttgcggaccctcgcctgaagcagcgaatcaagcagtac
ctaagcagtaataaatgtggccgatatgtggacattggaattttagcagctgatttacag
aaaacttacagtgcagaatatggacgaagaaaaagaaatgcctttagaattcaggttgag
aaagtgtttggtataatcagtaatgagagagaatttgaagatttaacaactttagagaat
gaacatgtggcaaaaagagcaagacacagacgagaagggaatgaggatgtggaaagctac
acagacgactcagatgatgatgattactcagaacctctatccacaaatcacctgaacagc
tctctgctgaccttataccggaaaggagatcctgattctcttccagcaactccgaagaat
gagccgacagaaaccagtacccctgcacaagtgacagcacccagaactagtgctcttcca
tctggcaccccacttgatactaggatctctgaaggtggatggtttattgataaaacccca
ggtagaaaagaagacaacttcttaattgacctgagtgaggaagaagaggaaaggaaacag
atatctgagaaatcaaaagacctttcttttttggagagtgaaggaaagaagacaaagagt
aagagacgaaaaagaaggaaagaggaatctcaagatgtagatgaagaaatagaatctgtt
ttgcgtaagcagaaagttaaaactaaaggaccagagctgcagttccctttagtgaaattt
gacgatgtgggaggcagtgatgaaactctgaaggaggtatgcaagatgctgatacacgtg
cgtcaccctgaagtatacaatcacttaggcgtggtcccacctcgaggatttcttttacat
ggaccacccgggtgtggaaagacattactagcacaggcaattgctggggaacttgaactg
ccaatgctcaaagtagctgctactgaaattgtatcgggagtctctggggagtctgaacag
aagctgcgagagttgtttgaacaagctgtgtccaatgcaccatgcatccttttcatagac
gagattgatgcaatcaccccaaaaagagaagttgcctcgaaagacatggagcggagaatt
gtcgcccagcttctaacctgtatggatgacctgaataatctggctgccactgctcaggtc
ctggtcattggagctactaacagaccagactcgttggacccagcattgaggcgcgctgga
agatttgatagagaaatttgtctagggattcctgatgaagcagctagagagagaattcta
cagactttatgtcgaaaacttaggctccctgaatcttttgattttcattatttagcccat
atgactccaggctacgtaggtgctgatttgatggcactttgtcgtgaagcagctatgtgt
acagtaaacagggtcctgataaagttggaggagcagaaatggaaaggtgtgcaggctgga
gaagcaaggactgagcaaaacttgaagactggaacagaagcactggtggaacaggatact
aaacattcagagcttcctgctaaggatgaattgcagaggctgctagagttgctaaaggaa
caagatcccctgctggagaagcagctgcagaagctctgcatcgaaatgaatgatttcatt
gttgcactgtcttcggtgcagccctccgccaagagagaaggctttgtcactgtccctgat
gtgacgtgggcggatgttggagccctggaggacattcgggaggagctcactatggcaata
ctggcacctgtgcggaatccagagcaattcaaatctcttggtctgacagctcctgctggt
gttctacttgcagggcctcctgggtgtggcaaaacactactggcaaaggctgtagcaaat
gagtctggactgaacttcatctctgtgaaaggtcctgaactgttaaatatgtatgttggt
gaaagtgagcgtgctgtacgtcaggtattccagcgggccagaaattcagccccttgtgtt
atattcttcgatgaagttgacgctttgtgccctcggagatcagaccgtgaggcaggtgcc
agtgtccgtgtggtaaaccagttgctaacagagatggatggtctggaaaatcgtcagcag
gttttcattatggcggctaccaacaggccagacataattgacccagctattctgcgccct
ggcagactggataaaacactctatgtgggtttgccaccacctgtggatcgacttgctatt
ttaaagaccatcaccaaagatggtacccgaccccctttggatgttgatgtaaaccttgaa
gaaatcgcttatgatcagcgttgtgattgctatacgggggcagatctttctgctctagtg
cgtgaagcttcagtttgtgccttgagacaggaaatggccctacagaatggcaagagcaag
aaaggagaaatcaagattagccaaaaatactttgaagaagcgtttaagaaagtgaaatca
tctatatcaagaaaggatcaagcaatgtatgatgagctgcgtcagtcactgagcagatga
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