Trachemys scripta elegans (red-eared slider): 117874812
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Entry
117874812 CDS
T07347
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117874812 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117874812 (ARID1B)
03021 Transcription machinery [BR:
tst03021
]
117874812 (ARID1B)
03036 Chromosome and associated proteins [BR:
tst03036
]
117874812 (ARID1B)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Helix-turn-helix
ARID
117874812 (ARID1B)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117874812 (ARID1B)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117874812 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117874812
NCBI-ProteinID:
XP_034621218
LinkDB
All DBs
Position
3:complement(89017462..89424015)
Genome browser
AA seq
2449 aa
AA seq
DB search
MIMAAQVAAAPAGAKNNKGKTPSLPGNLSQDLSSGGAAAAATGGPGPGSMLGVGDGTNSS
SLNNVDHHLLHHHNELNMANNATSAAATGNNNNNANTSSSSSSSSESALKEGGSSSGLPS
SSSSSSSSSNPGSAMETGLLPNHKLKNVGGDHPAAPPHHHAHHPHHHAHHHHAHHQHHHH
HALQQQLNQFQQQQPPPQHHPMQNNNSLGGGSSNNNNGGGGAAQPSADMEQQQHGGKDSV
LGNQAEPPPPPQQMLNKGGEEEELPSKMGEQIGGRYDHPSLGPLGGQQQQQPQSAGSGSG
SSSSSGGGGSGGGGGPSAVGVSEFNSYYGNPAPASSATASRAGPCFDQHGGQQSPGMGLM
HPTAAPNSMDPLQNSHDGYPNSQYNHYPGYGRPGGAAAGGVGAAAAAAAAASGAGGSGYG
GSSSGYGVLSSPRQQGSTMMMGPGGGASLGKAAATSGAGGFQRFSGQNQHPSGATPTLNQ
LLTSPSPMMRSYGSSYPDYSNPNAPPQQQPQPQAATAAPGSQQAAAGMGMGMGKDMGSQY
GSANPAWAAAQQRAHPAMSPGSTGQTINRTQGSPMDPMVMKRPQLYGMGNNPHSQTQQSS
PYPGQSYGPPGPQRYPMGMQGRTSGALGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQ
QPQPQHLPPQAQYLSQAQQRYQTQQDMSQEGYGTRSQPPIASGKPNHEDLNLIQQERPSS
LPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGEQSNPAQSPFSPH
ASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPSSQSESSSHPALSQ
SPMPQDRGFMAGIQRNPQISQYGPQQTGPSMSPHPSPGGQMHPGIGSFQQSNSSGTYGPQ
MSQYGPQGNYSRPSTYSGVPNTSYSGPGPGMGINANSQMHGQGPSQPCGTMPLGRMPSAG
MQSRPFPGNMGSMTPNSPGMSLQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRPPY
IRSPAYPSQSGAGGRPMFSSQHPNYGNAQAPMMHQPDQYGQGSFPGMNQSGIMGSSSPYT
QPMNNSSGLMNPQAPPYSMAPNMVNSSTGNAPMGLADMMTPGESKLPLPLKADGKEEGPP
QPESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSP
KSSSSTTTGEKITKVYELGSEPERKMWVDRYLTFMEERGTPVASLPAVGKKPLDLFRLYV
CVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPE
VFSTGDTKKQPKIQPPSPANSGSLQGPQTPQSTGSNSMTEVPGDLKPPTPASTPHGQMTP
MQGGRNSAVSVHDPFSDVSDSAFPKRNSMTPNAPYQQGMNMPDMMGRMPYEPNKDPFGGI
RKVPGSSEPFMAPGQMPNSGIQDIYNQTPSGAMSTISMSQRQQFSYGGGYDRRSDHGLGP
EGSMGPPGQSNMVPSNSDPSMYSPNRYPGQQRHEPYGQQYPGQGPPSGQPPYGGHQPGMY
PQQQNYKRHMDGMYGPPAKRHEGDMYNMQYGNQQQEMYNQYSNTYSGSDRRPIQGQYPYP
YNRERMQGPGQIQQHGIPPQMIGGPMQSSSTSEGPQQNMWPTRNDMPYPYQNRQGPGGPA
QAPPYPGMNRTDDMMVPDQRINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPP
SMPNHISRAPSPASFQRSLENRMSPSKSPFLPSMKMQKVIPTVPVSQVTGPPPQPPPIRR
EITFPPGSVEASQPVLKPRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYD
DSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPGHKALDHNAVKKDDSQSL
AVDTGKEEENDECIDYFDEDEEEDEEEEEEDEIEKIEGEEKSTVFATPSAIADPSERPKQ
ASKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEI
PPRRRAPPPLNSPSKKKDLEGKGEPEEQQEKSITATIDDVLSARPGALPEDSNPGSQTES
SKFPFGIHQAKSHRNIKLLEDEPRSRDETPLCTITHWQDSLAKRCICVSNIVRSLSFVPG
NDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEEEDKGVACSKDEWWWDCLEVL
RDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQR
LVLETLCKLSIQDNNVDLILATPPFSRQEKLYATLVRYVGDRKNPVCREMSMALLSNLAQ
GDMLAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAK
ALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7350 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtagcagcggctccggcgggtgcgaagaacaacaagggcaaa
accccgagtttgccgggcaacttgagccaggatctcagctcggggggagcagcggccgca
gccaccgggggacctggaccgggctccatgctgggggtcggagatgggactaacagcagc
agcctgaataatgtagatcaccatctcctgcaccaccataatgaactgaacatggccaat
aatgcaacttctgctgctgccaccggtaataacaacaacaacgctaacaccagcagtagc
agcagctcttcttcggagtcggctctgaaagaaggtggaagctcatcggggttaccgtct
tcttcttcctcctcctcctcctcctccaacccgggctcggccatggagacggggctgctc
cccaaccacaaactgaaaaacgttggaggcgatcaccctgctgcacctccccaccaccat
gcccaccaccctcatcaccatgcccaccaccaccatgcccaccaccagcaccaccaccac
catgcactacagcagcaactaaatcaattccagcagcagcagccgccgcctcagcaccat
ccgatgcagaataacaacagcctcggcggcggcagcagcaacaacaacaacggcggtggc
ggcgctgctcagcccagtgcagacatggagcagcagcaacatggaggaaaagacagtgtt
ttgggaaatcaggccgagcccccgccgccgccgcagcaaatgctgaataaagggggcgag
gaggaagagctgcccagcaaaatgggcgagcagatcggcggccgctacgatcaccccagc
ctgggacctttgggcggacagcagcagcagcagccccaaagcgctgggagcggcagcggc
agtagtagcagcagcggcggcggcgggagtgggggaggcggcggcccctccgcggtgggt
gtctcggagtttaatagctattacggcaaccctgcccctgccagcagcgctacagcgagc
cgagccgggccttgctttgatcaacatggcggacaacaaagccccgggatggggctgatg
caccccacggcggcccccaacagcatggaccccctgcagaactcccacgacggttacccc
aacagccagtacaaccactaccccggctacggccggcccggcggcgccgcagcgggagga
gtgggagcggcggcggcagccgccgcggctgcatcaggagccggaggaagcggctatggg
ggctcgtcctctggctacggggtgctgagctcccccaggcagcagggcagcaccatgatg
atgggcccaggtggaggggccagccttggcaaggctgctgcgacttctggggctggaggc
tttcagagattttccgggcagaaccagcacccgtccggggccacccctaccttgaaccag
ctgctcacttcccccagccccatgatgaggagctatggcagcagctaccctgattacagc
aaccccaatgccccaccacagcagcagccacaaccccaggcagcgacggcagccccagga
agccagcaggcagcagcgggcatgggcatgggcatgggcaaagacatgggctcccagtat
ggatctgcaaacccagcctgggcagcagcacaacaaagagctcatccagctatgagtcct
ggaagcactggtcagaccatcaacagaacccagggcagcccaatggatccaatggtaatg
aagagacctcagttgtatggaatgggcaataaccctcattcacagacacagcaaagcagt
ccatacccggggcagtcatatggccctccaggacctcagcgatatccgatgggaatgcag
ggacggacctcgggagccctgggaggaatgcagtatccacagcaacagatgccgcctcag
tatggtcagcaaggtgtaagtggctactgccaacagggccaacagccatattacaaccag
caaccgcaacctcagcatctgccgccccaggcacagtatctgtcgcaggctcagcagagg
taccagacacagcaggacatgtctcaggaaggctatggaaccagatcccaaccccctata
gcctcaggaaagcctaaccatgaagacttaaacctaatacaacaagaaagaccatcaagc
ttaccagttgaagtcttggcctcggaggatgctgcatttggactgaaggatttatccggc
tccattgatgacctgcccactggaactgaagcaacactgagttcagcagttagtgcatca
ggttctacaagcagccagggagagcagagtaaccctgcacagtcacctttctcccctcat
gcctccccacatctctctggcatcccagggggtccatcaccttcccctgtaggctctcct
gttggaagcaaccaatcaagatctggtccaatttctcctgcaagtattccaggtagtcaa
atgccacctcagcctcctagtagtcaatcagaatccagctcccatcctgccttgagccag
tcaccaatgccccaagatcgaggttttatggcaggcatacaaaggaacccacaaatatcc
caatatggacctcaacagactgggccttccatgtcaccacatccttcacctggaggccaa
atgcatcctgggattggtagtttccagcagagtaattcaagtggtacttatgggcctcag
atgagccagtatggaccacaaggaaactactccagaccgtcaacatacagtggggtgcct
aacacaagttacagtggcccaggacccggcatgggtataaatgccaatagtcagatgcat
ggacaggggccaagccagccatgtggtaccatgcccctgggacggatgccatcagctggg
atgcaaagcagaccatttcctggaaacatgggcagtatgacccccaattctcctggcatg
tctctgcagggaggccctgggatgggcccacccatgccaactgtgaaccgtaaggcacag
gaggcagctgctgcagtgatgcaggctgctgcaaactccgctcagagcaggccaccatac
attaggtcgcctgcttatcccagccagtctggggctggcggacgccccatgttttcttca
cagcaccccaactatggcaacgctcaggctcccatgatgcaccagcctgaccagtacggg
caaggcagttttcctggcatgaatcagagtggtattatgggatccagttctccctacacg
cagccgatgaacaacagctctggcctgatgaacccacaagctcctccttacagcatggca
cctaacatggtgaacagttcaacaggtaatgcacctatgggtcttgcagatatgatgaca
cctggtgagtccaaactgccccttcctctcaaagcagatggcaaagaagaaggaccccca
cagcccgagagcaagtcaaaggatagctacagctctcagggtatttctcagcccccaacc
ccaggcaacctgccagtcccttccccaatgtccccaagctctgctagcatctcctcattt
catggagatgaaagtgatagcattagcagcccaggctggccaaagactccatcaagccct
aaatcaagttcctccaccacaactggagaaaagatcacaaaagtctatgagttgggaagt
gagccagagcgcaagatgtgggtggatcgatacctcaccttcatggaagaaaggggcacg
cctgtggccagtctgccagctgtaggcaagaagccactggacctcttcaggctttatgtc
tgtgtcaaagagattggaggtttagcacaggttaataaaaacaagaagtggcgcgagttg
gcaaccaacctgaatgttggcacttcaagcagcgcagccagctccctgaaaaaacagtat
attcagtacctgtttgcctttgagtgtaagatagaacgaggggaggagccccctccagag
gtcttcagcactggagatactaagaaacaacctaagattcagccgccatctcctgctaat
tctggttccctacaaggtccacagactccccagtctactggtagtaattccatgacagaa
gtgccgggcgacttgaagcctccaacaccagcatcaacacctcatggacagatgacgccc
atgcagggcggcagaaacagtgcagttagtgtgcacgatcccttttctgatgtaagtgat
tctgcattcccgaagcgaaactccatgacgccaaatgcaccataccagcaagggatgaac
atgccagatatgatgggaaggatgccctatgaaccgaataaggacccttttggtgggata
agaaaagtgcctggaagcagtgagcccttcatggcccctggacaaatgcccaatagtgga
atacaggatatctataaccagactccatctggagcaatgtccaccataagcatgagccag
cggcagcagttctcttatggaggtggctatgacaggaggtcggatcatgggctgggtcct
gaaggcagtatgggaccacctggtcagagcaacatggtgccttcaaacagtgacccaagc
atgtactctcctaatcgttaccctggccagcagaggcatgaaccatatgggcagcaatat
ccagggcaaggacctccttcaggacaaccaccgtatggaggacatcaacctggaatgtat
ccacagcagcagaactataagcgtcatatggatggcatgtatgggcctccagcaaaacgc
catgaaggggatatgtataacatgcagtatggcaatcagcagcaagaaatgtataaccag
tacagcaacacttactctggatcagacaggaggcctatccagggacagtatccatatcct
tataacagggagaggatgcagggccccggacaaatccagcagcatggaatacccccacag
atgattggtggccccatgcagtcatcatccaccagtgaaggtcctcagcagaatatgtgg
ccaacacgaaatgatatgccttacccttaccagaacaggcaaggccctggaggccctgca
caggccccaccctatccagggatgaaccgcactgatgatatgatggtacctgaccagaga
ataaaccatgagagtcagtggccttctcatgtcaaccaacgtcagccttcttacatgtca
tcctcagcctccatgcagcctatcactcgacctcctcagtcgtcctaccagacaccaccc
tcaatgccaaaccacatctctagggctccaagtccagcatccttccagcgctctttagag
aaccgtatgtctccaagcaagtctcctttcctaccctctatgaagatgcagaaggttata
cccacagttccagtgtcacaagtcacaggacctccaccccagccaccaccaattaggcga
gaaattactttccctccaggctccgtagaagcatcgcaaccagtcttaaaaccaagacga
aagattacctcaaaagatattgtaactcctgaggcctggcgagtgatgatgtctcttaaa
tctggccttttggctgaaagtacctgggctctagacactattaatattcttctgtatgat
gacagcactgttgctactttcaacctttcgcagttatctggatttcttgagcttttggta
gaatattttagaaaatgcctgattgacatttttggaatccttatggaatatgaagtggga
gatccaggtcacaaagcacttgatcacaacgcagtcaagaaggatgacagccagtccttg
gcagtggatactggaaaagaggaggaaaatgatgaatgtattgactactttgatgaagat
gaggaggaggatgaagaggaggaggaggaagatgaaattgaaaaaatagaaggagaagaa
aagagcactgtttttgccactcccagtgccattgctgatccaagtgagaggccaaaacaa
gccagtaaatttgacaagctgccaataaagattgtaaagaaaaataatctatttgttgtt
gacagatctgacaaactggggcgtgttcaggaattcaacagtgggcttctccactggcag
cttggtgggggtgatactactgaacacatccagactcactttgagagcaagatggagatt
cctccacgaaggagggcccctccacccttgaactctccaagcaaaaagaaggatctggaa
gggaaaggtgaacctgaagaacaacaggaaaaaagtataacagctaccatcgatgatgtc
ctgtcagctcgaccaggagcattgcccgaagattcaaaccctggttcccagacagagagc
agtaaatttccctttgggatccatcaagccaaaagccaccggaatattaaactgctagaa
gatgagccaaggagccgggatgagactcctctatgcaccataactcattggcaagactcc
ttggctaaacgctgcatctgtgtgtcaaatattgtccgtagcttgtcttttgtgcctggc
aatgacgccgaaatgtccaaacatccaggcttggtgctgatcctgggaaagttgatcctc
cttcaccatgagcatccggaaagaaagcgagcgccacagacatatgagaaagaggaagag
gaggacaaaggggtggcctgcagcaaggatgagtggtggtgggactgcctcgaggtcttg
agggataatacattggtcacattagccaacatttctgggcagctagacttgtctgcttat
acagaaagcatctgtttgccaattttggatggcttgctgcactggatggtgtgcccatct
gcagaggcacaggatccttttccaaccgtggggcccaactcagtcctatcgcctcaaaga
cttgtgctggagaccctgtgtaagctcagtatccaagacaataatgtggaccttatcttg
gccactcccccattcagtcgtcaggagaaactctacgctactttagttaggtacgttggg
gaccgcaaaaacccagtctgccgagaaatgtccatggctctcttatcgaaccttgcccag
ggggacatgttagcagcaagggcaatagctgtgcagaagggaagcattggaaatttgata
agtttcttggaggatggggtcactatggcccagtaccaacagagccagcataacctcatg
cacatgcagcctccacctctggaaccacctagcgtagacatgatgtgcagggcagccaag
gctttgctagccatggctagagtggacgagaaccgctcagagttccttttgcatgagggt
cgtttgctggatatctcaatatctgctgtcctgaactctctggttgcatctgtcatctgt
gatgtactttttcagattgggcagttatga
DBGET
integrated database retrieval system
