Trachemys scripta elegans (red-eared slider): 117874814
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Entry
117874814 CDS
T07347
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117874814 (SCAF8)
03041 Spliceosome [BR:
tst03041
]
117874814 (SCAF8)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117874814 (SCAF8)
Spliceosome [BR:
tst03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117874814 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
MCM
Motif
Other DBs
NCBI-GeneID:
117874814
NCBI-ProteinID:
XP_034621240
LinkDB
All DBs
Position
3:complement(90525667..90612890)
Genome browser
AA seq
1373 aa
AA seq
DB search
MEAVKAFNSELYSLNEYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQNVSFNKKLMDRFDFGEEPDLSEEPKKETPNSQLPLVSESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
TNLDDSMDIQQQDMDIDEGQDVVEEEIFEQEEKKSAVRSRSRTHSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLDGFAEGGMIDQETVNTEW
ETVRSSEAVKENIQTTQSTTVDKNTAVTTQTEAYTQSVTMLQIPVAPAVPAVSLVPPSFP
VTMSVPPPGYSSIPPPPFLRASFNPSQPPPGFMPPPVPPVPPPVVPPPVVPQVVPTSLVQ
PPLSITQETMKDVPFGSLVLPVGTVSSSLATPTLSAASVFNPLPSNKPESEEKGSHLADV
QISSSENNRSVQNDVSSSSGLAGGVQPPGVSSSSGRVGGVQPPGVSSSSGRAGGVQPPGV
SSSSTLAGGMQPPSVSSSSALAGGVHPPGVSSSSALAGGVQPPGVSSSSGLLVGVPPPNV
SSSCGLLAGVPPPNVSSSSGLMAGVPPPNVSSSSGLLAGVPPPNVSSSSGLLAGVPPPNV
SSSSGLLAGVPPPNVSSSSGLLIVPPPNVSSSSGLLGMQHPAGIQNIPHLNISSQRMPGM
PLLDLRPGLIPQSPGPRFPLIQPGMPPQRNIPPPTILDPSLHPPPRGPFPPPGDLFNQTE
RHFGTPGRQNVDSISNPEKRLPLGGDSIQQEGDRDYRFPPVENRETLNRPSPVDVRDSIG
RPPVDPREGLGRPPIDGREHFARPHIDMRENFGRPGVDNIGRREHFGFNSEKHWGQRGDY
DEREHNIFPIYGGPKSFHEDRERFRHVNYRFDTRSGPNWNRGFEQDAHRDFDDRRRPWER
QRDRDDRDFNFCREINGNRFGRDRMQNNWIPPPHPRVFEYFEGATSQRKADNIPQVNGEN
TETESQPPNVQVQNDPELYEKLASSSEINKEKSDTEADIESEPVVESTETEGT
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcctttaacagcgagttgtactcgctaaatgaatacaaaccacct
atttctaaggctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aaacatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggta
cctggtctctatgtcattgactctattgtgcgacagtcccggcatcagtttgggcaagag
aaggatgtgtttgctcctagattcagcaataatatcatcagcactttccagaatttatac
cgttgtcctggggatgacaagagtaaaattgttagagtgctaaatttgtggcagaagaat
aatgtattcaagagtgaaattattcagcctctcctggatatggcagcaggaattcctcct
ccagttgtgactccagtcttgcccagtacaacagctgctatgagcaacaatactccagga
actcctgtgacccctgttactccagccaatgtggtacaaagtttacctgatccttgggtg
tctcaaattgctaatacagatacacttgctgctgttgcacaaatcttacagagtccccaa
ggccaacagcttcagcagttaatacagacactgcaaatacaacaacagaagccacagcct
tcactacttcaagcgctggatgctggtcttgtcgttcagttacaggccctcacagcacaa
cttacagctgcagctgctgctgccaacacacttaatccactggaacagaatgtctctttt
aacaagaagctgatggacaggtttgattttggggaagagcctgacctcagtgaagagcct
aaaaaagaaactcccaattcccaactgcctctagtatcagagtctgtgaacaactcactt
tttcatcagctagctgaacaactacaacaacaaaatttagaacatctccgacagcagctc
ctggagcaacagcagcctcaaaaggcaagccctgaggaaaatcaagagggaaattttgga
tcagagcactctgcatcaccatcacaagggagtagccaacagcagtttttagaagtggaa
acaaacctagatgattcaatggatattcaacagcaggacatggatatagatgaagggcaa
gatgtagttgaggaagagatctttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaacacactcaagatctcgttcaaggtcaccaagaaaacggaggtctaggtcacgg
tctggttcccgaaaacgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaag
cgaaagtcatctcggtcatactccagtgaaagaagagctagggaaagggaaaaagaacgc
caaaaaaagggattgcctcctatccggtctaaaacactaagtgtctgcagtactactctt
tgggttggtcaagtagacaagaaggccacacagcaagatttaactaatttgttcgaagaa
tttggacaaatagaatctattaacatgattcctccaagaggttgtgcatatgtctgcatg
gttcacagacaagatgcatatcgtgctcttcagaaacttagttctggatcctacaaaatt
ggatctaaaattattaagattgcttgggctttaaataaaggtgtgaaaacagagtacaag
caattttgggatgtggatcttggagtttcatatataccttgggaaaaagtaaaattggat
gatttggatggctttgctgaaggaggcatgatcgaccaggagactgtaaatacagaatgg
gaaactgtgaggagctcagaggctgttaaagaaaatatccaaactactcagagtacaact
gtcgataagaatacagctgttacaacacagacggaagcttatactcaatctgtaactatg
ctacagattccggtagctccagctgtgcctgctgttagtttagttccaccatcatttcct
gtcacaatgtctgtcccacctcctgggtatagttcaattccaccacctcccttcttgcgg
gcaagtttcaacccttcacaaccacctcctggttttatgcctcccccggttccaccagtc
ccaccgcctgttgttccaccacctgttgttccacaagtagtcccaacatctctagtgcag
cctcctctatccattactcaagagacaatgaaagatgttccttttggtagccttgtttta
ccagttggcactgtttctagcagcctagccactccaacattatcagcagcaagtgttttt
aaccctcttccaagcaacaaaccagagtcagaagaaaaaggatcacatcttgcagacgtt
cagatttcttccagtgaaaacaacagatctgttcaaaatgatgtctcaagcagctccgga
cttgcgggtggagtgcagccacccggtgtctcaagcagctccggacgtgtgggaggagtg
cagccacctggtgtctcaagcagctctggacgtgcaggaggagtgcagccacccggtgtc
tcaagcagctccacacttgcgggaggaatgcagccacccagtgtctcaagcagctccgca
cttgcgggaggagtgcacccacccggtgtctcaagcagctctgcacttgcgggaggagtg
cagccacctggtgtctcaagcagctctggacttttggtgggagtgccgccaccgaacgtc
tcaagcagctgcggacttttggcgggagtgccgccaccgaacgtctcaagcagctctgga
cttatggcgggagtgccgccaccaaacgtctcaagcagctctggacttttggcgggagtg
ccgccaccgaatgtctcaagcagctctggacttttggcgggagtgccgccaccgaacgtc
tcaagcagctctggacttttggcgggtgtgccaccacccaatgtctcaagcagctctggg
cttctaatagtgccaccacccaatgtctcaagtagttctggacttctggggatgcagcat
ccagcagggattcaaaacataccccatttaaatattagtagtcaaaggatgcccggaatg
cctctcttagatctccgtccaggactaataccccagtcacctggaccaagatttccatta
atacagcctggaatgccaccacagcgtaatatccctcctccaacaatccttgacccatcc
cttcatccaccacctagaggtccttttcctcctccaggagatctttttaaccaaacagag
agacattttggaacacctggaagacaaaatgttgatagcatttctaatccagaaaaaagg
ttaccacttggcggtgatagcattcaacaggaaggagaccgagactatcgctttccacca
gtggaaaacagagagactcttaatagaccatctccagtcgatgtcagggattctattgga
cggccaccagtagatccaagagagggtcttggaagacctccaatagatggaagagaacat
tttgcaagaccacatatagatatgagagagaattttggaagaccaggtgtggataatatt
ggtcgaagagagcattttggtttcaattcagaaaagcactggggacagagaggagattat
gatgaaagagaacacaatattttccctatctatggtggtcctaaaagcttccatgaagat
agagagagatttcggcatgtaaattacagatttgatactagaagtggtcccaactggaac
aggggatttgaacaagatgctcacagagattttgatgaccgtagaagaccctgggaaaga
cagagggatagggatgacagagattttaatttttgcagagaaataaatggaaacaggttt
ggaagagacagaatgcagaacaactggatccctcctccacatccaagggtttttgaatat
tttgaaggggccacttcacagcgcaaagctgataatataccccaggtaaatggtgaaaat
acagagacagaaagtcagccaccaaatgtgcaagtgcagaatgatccagaactttatgaa
aaactagcatcttcaagtgagataaacaaagagaagagtgacacagaagctgatatagaa
agtgaaccagtggtagaaagcacagaaactgaggggacataa
DBGET
integrated database retrieval system
