Trachemys scripta elegans (red-eared slider): 117874862
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Entry
117874862 CDS
T07347
Symbol
SHPRH
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117874862 (SHPRH)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117874862 (SHPRH)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117874862 (SHPRH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
PHD
zf-RING_5
PEP-utilisers_N
Motif
Other DBs
NCBI-GeneID:
117874862
NCBI-ProteinID:
XP_034621362
LinkDB
All DBs
Position
3:97145782..97291393
Genome browser
AA seq
1690 aa
AA seq
DB search
MSNRRKRAPPLRMDEEKKKQLCWNMHEDRRNEVILLDDNIDEDHPVPGPSTSSVSFVIDD
DSIDEGLAYRENRGSKSVGFSTDDGEDSCSILTSISVQLNIVVSPYHSDNSWKALLGEFV
LQLFPQKILIEKIHKRSFTLMRTDSGDQLQIFLHARSGEEGGEEEKESLGDYEEGILVES
SLNSEMLEDLRWLQKKKVIGLYQRPREDQALKVGIYLLEAGLSKSEFLSDGGGRIKKANQ
LIQKLMEKYYNFIIPDVLEEDEEESDRELERQNIEELYDFVRHTHQQEIQFLREDVQHSA
LIPVLRPYQSEAVNWMLQRENFRNNPTNENTLHFLWREVITPDGVKLYYNPFTGCIIREH
PVAGPPWPGGILADEMGLGKTVEVLALILTHTRRDVKQDVLTLPEGKLVNFFVPPQPTEG
NKKKKTKKVELKSKEKVQYPSLRVMILAAVKEMNVKKGASIIAIFKYVSAIYRYDIQRNR
RLLKRTLEKLIAEQVVEQVKGHGLAGSFKLGKNYKEQKRHERTKKQTTRSSGRIQKTSLP
NAKTQTKESASKVTSSEKVKPPRLVDIPAEEHDYCTTSKNNKKSETGQKTCIKEENLQPR
VMDLESADLQGDLMSSDSTNPVLTASKNTDDAEVLKDQSSDSQERAGSVIQHASSIFPFN
TSDYRFECICGELGLVDCKARVQCLKCHLWQHAECVNYKEENLKIKPFYCPHCLVAMKPV
STGATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLAEQEVVITTYD
VLRTELNYVDIPHSNSEDGRRFRNQKRYMAIPSPLVAVEWWRICLDEAQMVECTTAKAAE
MALRLSGINRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKHWWDQLLYRPYCRKNPQPLY
NLIANIMWRSAKKDVIDQIQIPPQTEDVHWLHFSPVERHFYHRQHEVCCQDALAKLRKIS
DWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCR
TECEEAHRQLVCALNGLAGIHIIKDEYALAADLYREVLRSSEEHKEKLKTDSLQRLHSTH
NLMELLAAKHPGIPPTLRDGRLEEEAEQLRQHYMSKSNAEVSEAHQALQPVLQTIRELQR
KIHSGSPWWLDVIQTAIQYAVDEELVQRVQNEITSNYKQQTNKLSMADKFRDCRGLQYLL
TTQMEEVKKFQKLVKEAVKNLEGPPSKKVIEAATICHLRPVRLPLNNCVFCKADELFTEY
ESKLFSHTVKGQTAIFEEMIEDEEGLVDDRLPTTSRGLWAASETERSLKAILSFAKAHRM
DVRLIEEGNTFLELFEAWKKEYKLLHEYWMVLRDHVSAIDELAMATERLRVRHPDEPKPS
PPVLHIIEPHEVEQNRVKLLNDKAVAKSQLQKKLGQLLYLTNLEKSQDKTTGGVNPEPCP
ICARQLGKQWAVLTCGHCFCNECIAIIIEQYSVGTRRSSIKCAICRQTTSHKEISYVFTA
ETANQEDDIPVKGSHSTKVEAVVRTLKKIQFKDPGAKSLVFSTWQDVLDIISKALYDNNM
VFAQINGISKFQENLSAFKYDPKINILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQ
AIGRVHRIGQTKPTIVHRFLIKATIEERMQMMLKTVERSHTSSSMKQSEASVLTVADLAD
LFTEETEELE
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcgtcgaaagcgtgcgcctccactgaggatggatgaggagaaaaagaagcaa
ctctgttggaatatgcatgaagaccgaaggaatgaggtaatactattggatgataacata
gatgaagaccaccctgttccaggtccaagcacctcttctgtatcctttgttatagatgat
gatagcattgatgaaggactggcttacagagaaaatagagggtcaaagtcagtgggtttc
tcaacagatgacggagaagactcttgctccatcttgacctctatatctgtacagctaaac
attgtagtctcgccttaccattcagacaattcctggaaagctttacttggagaatttgtt
cttcagctttttcctcagaaaattcttattgagaagatccataaaaggagttttactttg
atgagaacagattctggtgatcagctgcaaatctttcttcatgcaagaagtggagaagaa
gggggtgaggaggaaaaagaaagcctaggtgattatgaagagggaatattggtggaatca
tctctcaatagtgaaatgttagaagacttgagatggttgcaaaagaagaaggtaattgga
ctttatcaaagacctagagaagatcaagcattaaaggttggaatttaccttctggaagct
ggcttaagcaaatcagaatttctcagtgatggaggtgggagaataaaaaaggccaaccag
ctgattcagaaactaatggaaaagtactataactttataattccagatgtgttggaggag
gatgaggaagaatctgacagagagctggaacgacagaatattgaagagctgtatgacttt
gtgaggcacacacatcagcaggaaatccagtttttgagggaggatgtacagcactctgca
ttaattccagtactgaggccataccaaagtgaggctgtgaactggatgttgcaacgggag
aatttcagaaacaaccctaccaatgaaaacacactacactttctatggcgagaggtcatc
actccagatggagtaaaactctactataatccatttactggctgcattatccgtgaacac
ccagttgcagggcctccgtggcctggaggaattctggcagatgagatgggtcttggaaag
accgtagaggtactggctcttattctgacacacacccgacgagatgttaaacaagatgtt
ctgacactacctgagggtaaattggtgaacttcttcgttccaccccagcctactgaagga
aacaaaaagaaaaaaacaaagaaagtggagcttaagtcaaaggagaaagtacagtatccc
agcttacgggtgatgatcttagcagctgtcaaggaaatgaatgtgaagaagggagcttcc
atcattgcaatatttaagtatgtcagtgccatatatagatatgacatacagagaaaccgg
cgtcttctcaaaagaactttggaaaaactaattgcagaacaagtagtagagcaggttaaa
ggtcatggtctggctggatctttcaagttggggaagaattacaaagaacaaaagaggcat
gagagaaccaaaaaacagacaacaaggagttctggaaggattcagaagacatctttgcct
aatgctaaaactcaaaccaaagaatcagcaagtaaggtcacatcttcagaaaaagtcaaa
ccaccccggctggtggacattcctgcagaagagcatgactactgtacaactagcaaaaat
aacaaaaagtctgagacaggccaaaagacttgcataaaagaagaaaatcttcagccaaga
gttatggacttggaatctgctgatttgcaaggcgacctcatgtccagtgattccaccaat
cctgtcctcactgcatctaaaaatacagatgatgcggaagtcctaaaggaccagtcttca
gactcccaagaacgtgctggcagtgtcatacagcatgccagttccatttttccattcaac
acctctgactatcgttttgaatgcatttgtggtgagcttggcttggttgactgcaaggcc
cgtgtgcagtgcctgaagtgccacctatggcagcatgctgaatgcgtaaactacaaagag
gaaaacttgaagattaagcccttttattgtccccattgcctagtagcaatgaaaccagtt
tctacaggagccactctgataatctctccaagttccatctgccatcagtgggtggatgag
atcaacaggcatgtgagatcatcttcccttcgagtcctggtgtatcaaggtgtgaagaaa
catggcttcttgcagcctcacatgttagcagagcaggaggtagtcatcaccacttatgat
gtccttcgcactgagctgaactacgtggacatccctcatagtaacagtgaagatgggcgc
cgtttcaggaaccagaagcggtatatggccatcccaagtcccttagtagcagtagagtgg
tggaggatctgcctagatgaagcacaaatggttgaatgcaccactgcaaaggctgcagaa
atggcactccgtttgagtggaatcaatcgctggtgtgtcagtggcactcctgtacagcga
ggattagaagatctatatggcttagtgctttttcttggagttgatccttactgggtcaaa
cattggtgggatcagcttctgtatcgaccttactgtaggaaaaatcctcagcctctctac
aacctaattgccaacataatgtggagatcagcaaagaaggacgtgattgatcaaattcag
attccccctcagacagaagatgtacactggcttcacttttctcctgtggagagacacttt
tatcatcgtcagcatgaagtgtgctgccaagatgcactagcaaaactcaggaagatttct
gattggactcttaaacttagcagcttggacaggaggacggtcacttctattctgtaccct
ttgctgcggctgaggcaggcctgctgtcatccacaagctgttcgtggggaattcttgcca
ttgcagaaaagcaccatgaccatggaggagctactgacttcactgcagaagaaatgtcga
accgaatgtgaggaagcccatcgacaactggtgtgtgctctcaatggtttagctggtatc
catataattaaagatgaatatgcattggcagcagacctgtacagagaggtgttgcgttcc
tctgaagagcacaaagaaaagctcaaaacagattcgctgcaaagacttcattctacacac
aacctgatggaactactggcagcaaagcatccagggataccaccaaccttgcgtgatggc
agacttgaggaagaggctgaacaacttcgacaacattatatgagtaaatccaatgcagaa
gtttcagaagctcatcaggccttgcagccagtgctacagaccattcgtgagctccagaga
aagatacattctgggtcgccttggtggttggacgtgatccagacagcaatacaatatgcc
gttgatgaggagcttgttcagcgtgtgcaaaatgagataaccagtaactacaaacagcaa
actaataaactctccatggcagacaagttccgtgactgtagaggccttcagtatctgctc
acaacccaaatggaggaggtgaagaagttccagaagcttgtaaaagaagctgtgaaaaat
ctagaaggtcctccctctaagaaggttattgaagctgccactatctgccatctgcgacct
gttagacttcctttgaacaattgtgtcttctgtaaggctgatgagctgttcacagaatat
gagtcaaagctgttctctcatactgtgaaaggccagacggctatcttcgaagagatgata
gaagatgaagaagggctggttgatgaccgtttgcccaccacaagtcgaggactatgggcc
gcaagtgagacagagcgctccctaaaagccatactgtcttttgccaaagctcaccgaatg
gatgttagactaattgaagaagggaatacatttctggaactctttgaagcatggaagaag
gagtacaagttacttcatgaatattggatggtactcagggatcatgtttctgctatcgat
gaacttgctatggctacagaacggctccgagtgcgtcatcctgatgagccaaagcctagc
ccccctgttcttcacatcatagaaccacatgaggtagaacaaaatcgagtaaaacttttg
aatgacaaggcagttgccaaatcacagcttcagaagaaactaggccagctcctatatctt
actaatttggagaagtctcaggataaaactactggaggagttaatccggaaccgtgtcca
atttgtgcccgccaactgggaaaacagtgggcagtgctgacatgtggacattgcttctgt
aatgagtgcatagctattattatagagcagtacagtgttggcacccgcagaagttcgatt
aaatgtgccatctgcaggcagacaacttctcataaagaaatatcctacgtcttcactgca
gagactgcaaaccaggaggatgatattcctgtgaagggaagtcactccaccaaagtggaa
gctgtggttcggactctgaagaaaatccagtttaaagatccaggggctaaatctttagtt
ttctcaacgtggcaagatgttttggacataatttcaaaagctctatatgataacaacatg
gtgtttgctcagataaatggaattagtaaatttcaggagaacctctcggcatttaaatat
gatcccaagatcaatattttgttgctaccccttcatactggttccaatggattaaatata
attgaggcaactcatgttctgctagtggagcccattttgaatcctgcacatgaacttcag
gccattggcagagtgcatcgtattggacaaacaaagcccaccattgttcacaggttcctg
ataaaagcaacaatagaagaaagaatgcagatgatgctgaaaactgtagagagaagccac
accagttcttccatgaaacagtcagaagcctcagtgttgacagtggctgatctggcagac
cttttcacagaagaaactgaagaacttgagtga
DBGET
integrated database retrieval system
