Trachemys scripta elegans (red-eared slider): 117874912
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Entry
117874912 CDS
T07347
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117874912 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117874912 (HBS1L)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117874912 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
DO-GTPase2
DUF6331
Motif
Other DBs
NCBI-GeneID:
117874912
NCBI-ProteinID:
XP_034621496
LinkDB
All DBs
Position
3:104190676..104295374
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AA seq
687 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDCCISPSTAAQFIYSRRDKPSAFAERLEEYGY
EDAEEPAKNITSNHQLTGVDQARLYSCLDQMREVLGETAPEQVMVEAVLNSKFDVQKALD
LVLAQDSKQNVKTKNEEAVITGKTTKGKPRDSQSTRIDSKIVPKVTKMTVSGKKQAMGFE
VPSVIAEENGHSANTPQKRPSSEDSCVTSGVVELVSKSALPSQTIQIPEEQSTVPTPVKK
SSKTRQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTSCQSSELTEWYKGKCLLEQIDSF
KPPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCIFCGLKEPIKACTRFRARILIFNIDVPITKG
FPVLLHYQTVSEPATIRRLLSILHKSTGEVTKKKPKVLTKGQNALIELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcacaggaacgtccgaggctataactacgacgaagattttgaagatgatgat
ctttatggccaatcagtagaagatgattgttgtatttccccttcaacagctgctcagttt
atttactcaagacgtgacaaaccctcagcatttgctgagcgattagaagagtatggctat
gaagatgcagaagaacctgccaagaatattacatccaatcaccagctaactggagttgat
caagctcgtctttattcgtgccttgaccagatgagagaagtgctgggggaaactgcacca
gagcaggtgatggtggaagcagtgttgaatagtaaatttgatgtacagaaggctttggat
cttgtacttgcacaagacagtaagcaaaatgtgaagaccaagaatgaagaagctgtgatt
acaggaaagacaacaaaaggaaaaccaagagattcccagtcaaccagaatcgattctaaa
attgtgccgaaagttaccaaaatgactgtgtctggaaagaaacaagctatgggatttgaa
gttccaagtgtgattgctgaagagaatggccatagtgctaatacacctcaaaaaagacca
tcatctgaagattcctgtgtcacttctggagtagttgagttggtctctaaatcagctctt
ccatcccaaacaattcagattccagaagagcagagtacagtacctactccagtgaaaaag
tctagcaagacaagacaacaaatagatgtgaaagcagagctggagaagaggcaaggagga
aaacagctgctgaatttagtggtaataggacatgttgatgcaggtaaaagtactctaatg
ggtcatttactctaccttctgggcaacgtgaacaaacgaactatgcacaaatacgagcag
gaatccaaaaaggctggcaaagcttcatttgcttatgcatgggtcttggatgaaactggg
gaagaaagagaaaggggagtaacaatggatgtgggtatgaccaaatttgagacaaagact
aaagttattacattgatggatgctccgggccataaagatttcatcccaaatatgatcaca
ggagctgcacaggctgatgtggctatcttggttgtggatgccagcaggggggagtttgaa
gcagggttcgagactggtggacagactcgagaacatgggttattggttcgctctcttgga
gtaacacaactggcagttgcagtcaataaaatggaccaggtcaattggcaacaggagaga
tttcaggaaattaccagtaaacttggccagtttcttaaacaagctggctttaaggagtcc
gatgtagcttatatccctacaagtggtcttggtggtgaaaatctagtcacaagctgtcaa
tcaagtgaactcactgaatggtataagggaaaatgtttgttagaacaaattgattctttc
aagccaccacagagatcagtggataaaccgtttagattatgcgtatctgacgtttttaaa
gaccaaggatcaggattttgtgtgactggtaaaatagaagcaggctatattcagactgga
gaccgacttctggctatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcat
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgttggctgtatattttgtggtctcaaggaacccatcaaagcc
tgcactcgtttcagagctcgaatcctcatctttaatattgatgtccccattactaaagga
ttccctgtgcttttacactatcaaaccgtaagtgagcctgccactattagacgattattg
agtatccttcacaagagtactggcgaagtcacaaagaaaaaacctaaggtcctgactaaa
ggacagaatgctttaatagaactacaaacacaaaggcctgttgccctggaattgtacaaa
gattttaaagaacttggaaggtttatgttacgctacagcgggtccactatagctgcagga
gttgtcacagagattaaagaatga
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integrated database retrieval system
