Trachemys scripta elegans (red-eared slider): 117875011
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Entry
117875011 CDS
T07347
Symbol
COL10A1
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117875011
NCBI-ProteinID:
XP_034621719
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Position
3:117529763..117603273
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AA seq
677 aa
AA seq
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MQVQISFLLLLSLNIVQGGDGFFSERYQKQASMKGPHFLPFNVKSQGLQGRGEQGPPGLP
GPAGPRGQPGPAGPPGYGNPGPQGPPGPPGPPGFSAVGKPGLPGLPGKPGERGLNGEKGD
IGPAGLPGSRGPQGPPGIPGPAGISVAGKTGEQGPPGAQGPRGVPGEKGEAGIPGINGLK
GENGYGVPGRPGDRGLPGPQGPPGPPGLGGIGKPGENGFPGQPGVKGDRGLPGAPGPAGI
PGSQGLPGEPGAAGIGKPGANGPPGLPGIPGAKGLPGPPGMPGSPGLPGFGKPGLPGMKG
HRGPEGLPGVPGIKGDEGPAGVPGEPGPAGPPGNMGPQGLRGIPGENGLPGPKGEAGPAG
LAGYPGAKGDRGLPGLEGKPGYPGEQGLAGPKGPPGLSGPKGDNGHAGPPGLPGPMGAPG
LKGAPGFNGEPGPRGPSGIPGIRGPIGPPGIPGFPGTKGEPGAPGLPGPAGIATKGLNGP
MGPPGLPGPRGNNGEPGLPGPPGPPGPPGQAILPQMPDGYIKAGDSQGLTGMPLMKAGVN
QGLTGMPVSAFSAILSKAYPGATVPIKFDKILYNRQQHYDPRTGIFTCRIPGLYYFSYHV
HVKGTNVWVALYKNGSPIMYTYDEYKKGYLDQASGSAVIDLMENDQVWLQLPNAESNGLY
SSDYVHSSFSGFLFAHM
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtacaaatatcctttctgctgctgctttctctgaacattgtccaaggcggtgat
gggtttttttctgaacgataccaaaaacaagccagcatgaaggggccacatttcttacca
tttaacgtaaaaagtcaaggtttacagggaaggggagaacaaggacctcctggtctacca
ggtcctgctggcccaagaggacaaccaggcccagcagggccaccaggctatggaaatcca
ggtcctcaaggtccaccaggacccccaggcccacccggattttctgctgttggaaagcca
ggcttaccaggtttaccaggaaaaccaggggagagaggattaaatggtgaaaaaggagat
attggacctgctggtctcccaggatcaagagggccacaggggcctcctggaattcctggt
cctgctggaatctctgttgctggcaagacaggagaacaagggccaccaggagcacaaggg
ccccggggtgtccccggagaaaagggtgaggcaggtattcctggcataaacggactaaag
ggagaaaatggatatggagttccaggtcgcccaggagacagagggctcccaggcccccaa
ggccccccaggaccccctggacttggtgggatagggaagcctggtgaaaatgggtttcca
ggtcagccaggtgtgaaaggtgatcgaggtttgccaggtgcaccaggaccagcaggcatc
ccaggttcccaaggtcttcctggggaacctggagcagcaggaatcggaaagcctggagca
aatggaccaccaggattaccagggattcctggagctaaaggactgcctggacccccgggc
atgcctggatccccaggtcttccagggtttggaaagccaggtttgccagggatgaaagga
catagaggacctgaaggccttcccggtgttccaggaatcaaaggagatgaaggcccagct
ggagttccaggagaaccagggccagctggaccacctggaaatatgggtcctcaaggactt
agaggaataccaggtgaaaacggcctacctgggcctaaaggtgaagcaggacctgcaggc
cttgcaggatacccaggagctaaaggtgacaggggcctaccaggattagagggaaaacca
ggatatccaggggagcagggtcttgctggtcctaaaggacctccaggtttatcaggccca
aaaggggacaatggtcatgcagggccacctggcctacctggtccaatgggtgcaccagga
cttaaaggagcaccaggatttaatggtgagccaggcccaagaggaccttctggaatacct
ggtataagaggtccaattgggccaccaggcattccaggttttccaggcactaaaggggag
ccaggggcaccaggattaccaggtccagctggcattgctacaaaaggtttaaatggaccc
atggggccacctgggcttccaggcccaagaggcaacaatggagagcctgggttaccaggc
cctccgggtccacctggtcctcctgggcaagcaatactcccacagatgccagatggttat
ataaaagcaggagacagtcaaggcctcacaggaatgcctcttatgaaagcaggagtaaat
caaggtctaactggaatgccagtgtcagctttctctgccattctctccaaagcctaccct
ggggccactgtgcccattaaatttgataaaatcttatacaacagacagcaacattatgac
cccagaacaggaatcttcacatgtaggatcccaggactttactatttttcttaccatgta
catgtaaaaggaacaaatgtttgggtcgcactctacaaaaatggctcaccaatcatgtac
acttatgatgagtacaagaaaggataccttgaccaagcttctggaagtgctgtcattgat
ctcatggaaaacgatcaagtctggttgcagttgcccaatgcagaatctaatggcttgtat
tcttctgattatgttcactcctctttctcaggattcttgtttgctcatatgtga
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