Trachemys scripta elegans (red-eared slider): 117875065
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Entry
117875065 CDS
T07347
Symbol
PRDM1
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117875065 (PRDM1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117875065 (PRDM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-C2HE
zf-met
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
117875065
NCBI-ProteinID:
XP_034621848
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All DBs
Position
3:complement(124814902..124931108)
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AA seq
786 aa
AA seq
DB search
MKMDMEDADMTLWTEADFEEKCTYIVNDHPWDPSDDGSTITQAEASLPRNLTFKYTSNCK
EVTGVVSKEYIPKGTRFGPLVGEIYTNDTVPKNANRKYFWRIYSSGELHHFIDGFNEDKS
NWMRYVNPAHSVQEQNLAACQNGMNIYFYTIKPIPANQELLVWYCPDFAERLHYPSSREL
MMNLTQSHVNPKQQSTDKNELYQKSIPKREHSVKEILKTETNNSKGKDLFQTNISPITPE
KHLDDLRKNCSPERSFFPRVVYPIRPHIPEDYLKTSLVYGMERPSYITHSPIQSSTTPSP
SARSSPDQSLKSSSPHSSPGVTVSPLAPTSQEHRESYPYLNGPYGSEGLGSYPRYAPPSH
LSPFLSSYNSHFQKFLLPPYSMSCNNLSALNNINGINNFNLFPRMYPLYSNLLNGGSLSH
HMLNPAPLPSSLPPEGGRRLLQPDHPRDFLIPAPNSAFSITGAAASMKDKPCSPTSGSPT
AGTAATSEHIMQPKPTSAVLAATSEEAMNLIKSKRNVTGYKTLPYPLKKQNGKIKYECNV
CSKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKR
FSSTSNLKTHLRLHSGEKPYQCKLCPAKFTQFVHLKLHKRLHTRERPHKCVHCHKSYIHL
CSLKVHLKGNCPVAPASGLSMEDLNRINEEIEKFDISDSADRLEDVEDNIDMASVVEKEI
LTMLRREIEGASLKVSLQRNMGNGLISSGCNLYESSDMSVMKLPHGHPLPLLPIKVKQET
VEPMDP
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggacatggaggatgctgacatgactctgtggacagaggctgattttgaagag
aagtgtacatacattgtaaatgatcacccctgggatcccagcgatgatggaagcaccata
actcaggcagaggcgtccttgccaaggaacttgactttcaaatatacatcgaactgcaaa
gaggttactggagttgtaagtaaagagtacatcccgaaaggaacacgttttggacccctg
gtaggagagatctataccaacgatacagttcccaagaatgcaaacagaaaatacttttgg
cggatctattccagtggtgaacttcaccacttcattgacggatttaatgaggacaagagc
aattggatgcgctatgtgaacccagcccattctgttcaggaacagaatttggcagcttgt
cagaatggaatgaacatctatttctacactatcaagcccatccctgccaaccaagaacta
cttgtgtggtattgtccggactttgcagagagactgcactatccttcctccagagagctg
atgatgaatctcacacaaagccacgttaatccaaagcagcaaagcactgataaaaatgag
ctttatcagaaaagtatcccaaagagagagcatagtgtgaaagaaatcctgaaaactgaa
accaacaattcaaaaggaaaggacttattccagactaacatttcaccaattactccagaa
aaacacttggatgacttgagaaaaaactgtagcccggaaaggtctttctttcctcgtgtt
gtctatccaatccgacctcacattccagaagattatttgaaaacttccctagtttatggg
atggaaagacctagctacattactcactcacccatccagtcttctaccacaccaagtcct
tcagcaaggagcagcccagaccaaagcttaaaaagctcaagcccacacagcagtccaggg
gttacagtttctcctctggcacctacttctcaagaacacagagaatcttacccatacttg
aatggaccctatggctcagaaggattggggtcttatcctagatatgcgccccctagccat
ctctcaccgtttttatcctcttataattcccactttcaaaaattcctgttacctccgtac
agtatgagctgtaataatctgagcgctttgaacaatattaatggcatcaacaatttcaat
ctgttcccaaggatgtatcctctctatagcaacctactcaacggaggaagcctttcccat
cacatgctgaacccagctcctcttccaagttcattgccacctgaaggaggccgtagattg
ctacaacccgatcatccaagagactttctcataccagcacctaacagtgccttttccatc
acaggcgctgctgccagcatgaaagacaaaccatgcagccccaccagtgggtcccccaca
gctggcacagcagccacttcagaacacataatgcaacctaaacctacctcagcagtgttg
gctgccaccagtgaagaagccatgaatctcattaaaagtaagaggaatgtgactggttac
aaaacccttccatatccactgaagaagcagaatgggaagatcaagtatgaatgcaatgtt
tgctccaagacctttggccagctctccaatctgaaggtccacctcagagtacatagtgga
gagagaccattcaaatgtcagacttgcaataaagggttcactcagctggctcatctccag
aagcactatctggtacacacaggagaaaagcctcatgagtgtcaggtttgccataaacga
ttcagcagtactagcaatctaaagacccatctgcgactccactctggagaaaagccttat
cagtgcaagctgtgccctgctaaattcacccagtttgtacacctgaagctgcacaagcgt
ctccataccagggaacggccacacaagtgtgtccactgccacaagagctatattcacctc
tgcagcctcaaagtccatctgaaaggcaattgccctgtagcccctgcctctggcctctca
atggaggacctgaatcgtatcaatgaagagattgagaagttcgacatcagtgacagtgct
gacaggttggaagatgtggaggacaatatcgatatggcatctgttgtcgaaaaagaaata
ctgaccatgctcagaagagagatagaaggagctagtcttaaagtatctttgcagaggaac
atgggaaatggacttatctcctcaggatgtaacctttacgaatcttcagacatgtcagtt
atgaagttgcctcatggtcatccactacctctgttacctataaaggtcaagcaagaaaca
gttgaaccaatggacccttaa
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