Trachemys scripta elegans (red-eared slider): 117875214
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Entry
117875214 CDS
T07347
Symbol
COL21A1
Name
(RefSeq) collagen alpha-1(XXI) chain isoform X1
KO
K16629
collagen type XXI alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
VWA_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117875214
NCBI-ProteinID:
XP_034622187
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Position
3:157928873..158130321
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AA seq
957 aa
AA seq
DB search
MAQNLKFLQTILILLLQDYISAEDGEIRASCRTAPADLVFILDGSYSVGPENFEIIKRWL
VNITRNFDIGPKFIQVGVVQYSDYPVLEIPLGTHDSTENLIREMEFIQYLGGNTRTGRAI
QFSIDHLFAKSSRFLTKIAVVLTDGKSQDEVKDAAAEARKNKITLFAIGVGSEIEEDELR
AIANKPSSTYVFYVEDYIAISRIREVIKQKLCEESVCPTRIPVAARDEKGFDILLGLGVK
KKVKKRIQIPSSNAKAYEITSNVDLSEFTRNVFPEGLPPSYVFVSTQRFKVRKTWDLWRI
LSLDGRPQITVTVNGEDKTLSFTTTSLVNGTQVVTFTAPHVKTLFDEGWHQIRLLVTEAH
VTLYIDDQETEMKPLHPVLGIYISGLTQIGKYPGKEETVQFDVQKLRIYCDPEQNNRETA
CEIPGFNGECMNGPSDVGSTPSPCICPPGKQGPPGPKGDPGQPGNHGYPGQPGPDGKPGY
QGIAGTPGVPGSPGIQGPRGLQGIKGEAGRDGAKGERGFPGFPGLHGMPASKGERGPKGD
QGPPGIYGKKGAKGEKGDPGFPGMPGRSGEPGRNGKDGLPGSPGFKGEVGKPGSTGTEGH
RGDPGIPGIPGSHGTKGQKGEIGPPGQPGAKGSPGAAGVMGPAGSSGRPGTSGSKGYKGE
PGVQGKPGSSGVKGEQGGPGTPGEPGYPGMPGTQGVKGEKGNQGERGIQGQKGEGGRPGT
PGQQGANGLNGANGEKGEKGDPGIRGLNGQKGESGVNGLVGPSGPRGQQGDRGHPGPPGA
DGKPGREFSEEFIRQVCADVLRTQLPVILRSGRLQNCNHCQSQSASPGLPGPPGPIGPEG
PRGFSGLPGNDGVPGLPGAPGSPGARGAKGLPGKNGEKGSQGTGVPGIQGPPGPPGREGP
PGMSKEGRPGESGQPGKDGDRGNPGIQGQPGPPGICDPSLCFSVIVGRDPFRKGPNY
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcacagaacttaaagtttcttcagacaattttaattctgctacttcaggattacatc
tcggctgaagatggtgaaataagagcaagttgcagaactgctccagcggatttagttttc
atcttagatggctcctacagtgttggcccagaaaactttgaaattatcaaaaggtggctt
gtcaatattacaagaaattttgacatagggccaaagtttattcaagttggagtagtccag
tacagtgattaccctgtacttgaaatcccactaggaactcatgattctactgaaaatcta
atcagagaaatggaattcatacaatatttaggtggaaatacgagaacaggaagagctata
cagttttcgattgaccacctttttgctaaatcctcaagatttctaactaaaatagctgtt
gttctcactgatggcaagtcccaagatgaagtcaaagatgcagcagcagaagcaagaaaa
aacaaaatcactttgtttgctattggtgttggctcagaaattgaggaggatgaacttaga
gctattgccaacaagccttcatcaacttacgtattttacgttgaagattatattgcaata
tccagaataagagaagtaataaagcagaaactctgtgaagaatctgtttgtccaacaaga
attccagtggcagctcgagatgaaaaaggatttgatattcttctaggattaggtgtgaag
aaaaaggttaaaaagagaattcaaatcccatcttctaatgcaaaagcttatgaaataaca
tcaaacgttgacttgtcagaatttacaaggaatgtgtttccagaaggtcttcctccatca
tatgtgttcgtctccacgcagaggtttaaggtcagaaagacatgggatttgtggaggatt
ctaagcctggatgggaggccgcaaataacagttactgtaaatggggaagataaaacatta
tcctttactacaacaagcttagtaaatggaactcaggttgtcactttcactgcacctcat
gtaaagacattgtttgacgaaggctggcatcagattcgtctcttggtaacagaagcacat
gtaactttgtatatagatgatcaagaaactgaaatgaagccattacatcctgttttaggt
atctacatcagtggactaacccaaatagggaaataccctgggaaagaggaaactgtacag
tttgatgtccagaaactaagaatctactgtgacccagaacaaaacaaccgagaaacagct
tgtgaaatcccgggatttaatggagagtgtatgaatggccctagtgatgtaggctccaca
ccttctccttgtatatgtcctccaggaaaacaagggcctccaggcccaaaaggagaccct
ggacaacctgggaatcatggttatcctggacagcctggtccagatggtaagcctggatat
caaggaatagcaggaactccaggtgttccaggatccccagggattcaagggccccgtggc
ttacaaggtatcaagggagaggcagggagagatggtgcaaagggtgagcgtggatttcct
ggttttcctggattacatgggatgccagcatcaaagggtgaaaggggtcctaagggagat
caaggaccaccaggaatttacggaaaaaagggtgctaaaggggaaaaaggtgatccaggt
tttccaggaatgccaggacgatctggggaacctgggagaaatgggaaggatggattacct
ggaagccctggctttaagggagaagttgggaagcctggttctacaggaacagaaggacat
cggggagatcctggaattcctggaatccctggaagtcatggaacaaaaggacaaaagggt
gaaatcggacctccagggcaaccaggagcaaaaggatcaccaggggccgctggagtgatg
ggacctgcgggatcatctggccgacctggaacatctgggtctaagggctataagggtgaa
cctggagtacaagggaaaccaggatcatcaggagtcaagggagaacaaggaggaccaggt
actccaggtgaaccagggtacccaggcatgcctgggacacagggtgtaaagggggaaaaa
ggaaaccaaggtgaaagaggtatccagggacaaaagggagaaggaggaagaccagggact
ccaggccaacagggagcaaatggattgaatggagcaaatggagagaaaggtgagaaagga
gatcctggcattagaggcctcaatggacaaaaaggagaatctggtgttaatggtttggtt
ggaccttctggtccgagaggacaacagggagacagagggcacccagggccacctggagca
gatggaaaaccaggaagggaattttcagaagaatttattcggcaggtttgcgcagatgta
ctgagaacccagttgcctgttatccttcggagtggaaggctacaaaactgcaatcattgt
caatcccaaagtgcttctccaggacttcctggtccaccgggtccaataggaccagaaggt
cccagaggtttttctggattaccaggaaatgatggtgttccaggtcttccaggagctcct
gggagtcctggtgcccgtggggcaaaagggctaccaggaaaaaatggagaaaagggcagc
caaggaactggggttcctggaatacaaggcccccctggccctccaggtcgtgaaggtcca
cctggaatgagtaaagagggacgtcctggagaatctgggcagcctggtaaagatggagat
cgtggaaatcctggaattcaaggacaacctggacccccaggaatttgtgatccatcgtta
tgttttagtgtaattgtaggaagagatccatttagaaagggcccgaactattaa
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