Trachemys scripta elegans (red-eared slider): 117875313
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Entry
117875313 CDS
T07347
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117875313 (DDX1)
03016 Transfer RNA biogenesis [BR:
tst03016
]
117875313 (DDX1)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117875313 (DDX1)
Spliceosome [BR:
tst03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117875313 (DDX1)
Transfer RNA biogenesis [BR:
tst03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117875313 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
117875313
NCBI-ProteinID:
XP_034622425
LinkDB
All DBs
Position
3:178091313..178126107
Genome browser
AA seq
705 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGVTKGKYYYEVSCHDQGLCRIGWSTMQASLDLGTDKFGFGYGGTGKKSHNKQFD
SYGEEFTMHDTVGCYLDIDKGQIKFSKNGKDLGIAFEIPPHIKSQALFAACVLKNAELKF
NFGEDDFKFPPKDGFIALCKAPDGNVLKSQQAGNAQVAQTKNLPNAPKALIVEPSRELAE
QTLNNVKQFKKNVDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHGQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDKLWERLGKNHIRTDEVHAKDNTRPGVN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFMQQGGGPDRKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLG
EIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQRRATGGKQLISVR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttctccgagatgggtgttatgccagagatagctcaagctgtggaggagatg
gactggcttcttcccacagatattcaagctgagtctatcccgttgattctaggaggtggt
gatgtgcttatggctgcagaaactgggagtggaaagactggtgctttcagcatcccagtt
atccagattgtttatgaaacacttaaggaccagcaagaaggcaaaaaggggaaaacaact
atcaaaactggtggggcagtgctcaacaaatggcagatgaacccatacgatagaggatca
gcttttgcaattggatcagatggtctgtgttgccaaagcagagaggtaaaggaatggcat
ggatgcagagcaactaaaggagtgactaaaggaaaatactattatgaagtatcctgtcat
gaccagggcttgtgcagaattgggtggtccactatgcaggcttcattggatttgggcact
gacaaatttggctttggctatggtggaactggaaagaagtcacacaacaaacagtttgac
agttatggtgaggaattcactatgcatgatacagttggatgctatctggatatagacaaa
gggcaaatcaagttctccaaaaatgggaaagaccttggcattgcatttgaaatcccacca
catataaagagccaagcactctttgcagcctgtgttctgaagaatgctgaattgaaattc
aattttggtgaagacgactttaagtttccaccaaaggatggatttattgctctttgcaaa
gctcctgatggaaatgttctgaaatcgcagcaggcaggaaatgcacaagtggctcaaaca
aagaaccttcctaatgctccaaaagcattaattgtggaaccatccagagagttagcagaa
caaactttgaacaacgtaaaacaattcaaaaaaaacgttgataatcctaaattaagggag
ctcctaattattggtggtgttgctgcaagagatcagctttccgttctggaaaacggtgtg
gacatagttgtaggaacccctggaagattggatgacttggtgtcaactggaaagcttaac
ttatctcaagttagattcctggttcttgatgaagctgatggcctccttctccaaggttat
tcagacttcataaacagaatccatggtcagattcctcagataacttcagatggaaaaaga
ctgcaggttattgtgtgttctgcaactctacattcttttgatgtgaagaaactgtctgag
aagatcatgcatttccccacttgggttgacttaaaaggagaggattctgtcccagaaact
gtgcaccacgttgttgttcctgtgaatcccaaaagtgacaaactatgggaaaggcttggc
aagaatcatattaggactgatgaggtacatgcaaaagataatacaaggcctggtgttaac
agtccagaaatgtggtctgaagctattaaaatactaaagggagagtatgctgttcgagca
attaaggaacacaagatggatcaagcaattattttctgcagaactaaaatagactgtgat
aacatggagcaatactttatgcaacaaggaggaggcccagataggaaaggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcatgaaagaaaacaaaacttggaaaga
tttaagaaaggagatgtcagattcttgatctgcaccgatgtagctgctagaggaattgat
atccgtggtgttccttatgttatcaatgtcacgcttcctgatgaaaagcaaaactacgtt
catcgaattgggagagtaggcagagctgaaagaatgggtctggcgatttcccttgtggca
acagaaaaagagaaggtgtggtatcatgtttgtagtagccgtggaaagggttgctataat
accaggctgaaggaagatggaggttgcactatatggtacaatgagatgcagttgctgggc
gaaattgaagagcacctgaactgtactatttcccaagttgagccagatataaaagtaccg
gtggatgacttcgatgggaaagttacatatggacaaagaagggctacaggcggtaagcaa
ctaattagtgttcggtag
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