Trachemys scripta elegans (red-eared slider): 117875402
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Entry
117875402 CDS
T07347
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst00100
Steroid biosynthesis
tst01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
117875402
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tst01006
]
117875402
Enzymes [BR:
tst01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
117875402
Prenyltransferases [BR:
tst01006
]
Terpene biosynthesis
Squalene/phytoene synthase
117875402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
Motif
Other DBs
NCBI-GeneID:
117875402
NCBI-ProteinID:
XP_034622590
LinkDB
All DBs
Position
3:complement(193566618..193590763)
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AA seq
458 aa
AA seq
DB search
MAASTKAVALFKRTLALSPPRCPGGGQRCSSSPLPLPGGRRRGGSRLLHQGSPPGACPAS
PRFQQPVSPLLCPQDALSDGLRTCYRYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRAL
DTVEDDMTINLETKVPILHDFHSYLYQPDWRYLESKEKDKQVLEDFPTISLEFRNLAKVY
RDVIADICHKMGAGMAEFLEKKVDTQHELDKYCHYVAGLVGIGLSRLFSASELEDPIVGQ
DTQLANSMGLFLQKTNIIRDYLEDQVEGREFWPREVWSRYAKKLSDLAKPENIDVAVQCM
NELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIATLAACYNNKQVFRGLVKIRKG
QAVTLMMDATNIQAVKAIMYQYVEEIYQKVPSTDPSSNKTQQIIVSIRTMSLPNGVEVSR
NHYSPIYLSCAMLLAALSWQYLSVMSKASEEYVQASEN
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcaccaaggccgtggccctcttcaagcggaccctggcgctgtctcccccg
cggtgccccggcggcggccagcgctgttcgtcctcgccgctgcccctgccggggggccgg
cgccgcgggggcagccgcctcctgcaccagggctccccgccgggggcctgcccggcctcg
ccccgcttccagcagcccgtgtcccctctgctctgcccgcaggacgcgctcagcgacggc
ctcaggacctgctaccggtacctgaaccagaccagccggagcttcgccgccgtcatccag
gccctggacggggagctgcgtcatgctgtgtgcatattctatctggttctccgagctctg
gacacggtagaagatgatatgaccatcaacttagaaaccaaggtcccaatattgcatgac
ttccactcctacctgtatcagccggactggagatatttggagagcaaggagaaggacaag
caggtgcttgaggacttcccaacgatctccttggagttcagaaacctggcaaaggtgtat
cgagatgtgattgcagatatttgtcacaagatgggagctggaatggccgagttcttggaa
aagaaggttgacacccagcatgagttggataagtattgtcactatgttgctgggctggtg
ggcattggcctttcccgtctgttctctgcatcagagctagaagaccctatcgtaggacag
gacacacagcttgcaaattccatgggcctctttcttcagaaaaccaacatcattcgtgat
tatctggaggaccaggtggagggaagagaattctggcccagagaggtttggagcaggtat
gccaagaagctgtcagatctcgccaagccagagaacattgacgtggccgtccagtgtatg
aatgaactgatcacaaatgcattgcaccacgtccccgatgtcctcacctacttatctaga
ctgaaaaaccaaagtgtcttcaacttctgtgctattccgcaggtgatggccatcgccact
ctggcggcctgttacaataacaaacaggtgtttagaggtctagtgaagatacggaaagga
caagctgtcactttaatgatggacgccacaaacatacaagctgtcaaggctataatgtac
cagtatgtggaagagatctatcaaaaggtcccaagcacagacccttcttctaacaagacc
cagcagatcatcgtctcaatacggacaatgagtttgcccaatggtgtcgaggtatcccgt
aaccattactcccccatctacctttcatgcgccatgcttctggcagcactgagctggcag
tatctgagtgtgatgtccaaggcatcagaggagtatgtacaggccagcgagaactga
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