Trachemys scripta elegans (red-eared slider): 117875403
Help
Entry
117875403 CDS
T07347
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst00100
Steroid biosynthesis
tst01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
117875403
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tst01006
]
117875403
Enzymes [BR:
tst01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
117875403
Prenyltransferases [BR:
tst01006
]
Terpene biosynthesis
Squalene/phytoene synthase
117875403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
CNV-Replicase_N
Motif
Other DBs
NCBI-GeneID:
117875403
NCBI-ProteinID:
XP_034622592
LinkDB
All DBs
Position
3:complement(193604865..193625435)
Genome browser
AA seq
431 aa
AA seq
DB search
MPLSLIPRCTRLPMERVGKWLGRPREIYNLLRFKMGGGAAVMPPLDQDALSDNLKTCYKH
LNQTSRSFAAVIQALDGELRHAVCILYLVLRALDTVEDDMTISLETKVPMLHDFHSYLYQ
PDWRYVESKEKYKQVLEDFPTISLEFRNLAKVYRDVIADICHKMGAGMAEFLQKKVDSLQ
EWDKYCHYVVGLVGIGLSRLFSVLELEDPIIGQDTELANSMGVFIEKTIIIRDYLEDQLA
GREFWPREVWSRYAKKLSDLAKPENIDMAVQCMNELITNALHHIPDVLTYLSRLKTQSVF
NFCAIPQVMAIATLAACYNNKQVFRGVVKIRKGQAVTLMMDATNIQAVKSIMYQYVEEIY
RKIPSTDPSSNKTRQIIVSIQTICLPNGTVVYRNHYSHIYLSCAMLLAALSWQYLSAMSE
ALEEDIQANEN
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgtcactcatccccaggtgcacgcggctgcccatggagcgggtggggaagtgg
ctgggccgcccccgggagatctacaacctgctgcggtttaagatgggtggcggcgcagca
gtgatgcccccactggaccaggacgcgctcagcgacaacctcaagacctgctacaagcac
ctgaatcagaccagccggagcttcgccgccgtcatccaggctctggacggggagctgcgt
catgctgtgtgcatattgtacctggtactccgagctctggacactgtagaagatgatatg
accatcagtttagaaaccaaggtcccaatgttgcatgatttccactcctatctatatcag
ccagactggagatacgtagagagcaaggagaagtataagcaagtgcttgaggacttccca
acgatctccttggagttcaggaacctggcaaaggtgtatcgagatgtgattgcagatatt
tgtcacaagatgggagctggtatggcagagttcttgcaaaagaaggttgattccctgcaa
gagtgggataagtattgtcactacgttgttgggctggtgggcattggcctttcccgtctg
ttctctgtgctggagctagaagaccctatcataggacaggacacagagcttgcaaattcc
atgggcgtcttcattgagaaaaccatcatcatccgtgattatctggaggaccagttggca
ggaagagaattctggcccagagaggtttggagcaggtatgccaagaagctgtcggatctc
gccaagccagagaacattgacatggccgtccagtgtatgaatgaactgatcacaaatgca
ttgcaccacatccccgatgtcctcacctacttatctagactgaaaacccaaagtgtcttc
aacttctgcgctattccgcaggtgatggccatcgccactctggcggcctgttacaataac
aaacaggtgtttaggggggtggtgaagattcggaaaggacaagctgtcactttaatgatg
gatgccacaaacatacaggctgtcaagtctataatgtaccagtatgtggaagagatctat
cggaagatcccaagcacagacccgtcttctaacaagacccggcagatcattgtctctatc
cagacaatatgtttgcccaacggcacggtggtctaccgtaaccattactcccacatctac
ctctcatgcgccatgcttctggcagcgctgagctggcagtatctgagtgcgatgtcagag
gcgttggaggaggacatacaggccaatgagaactga
DBGET
integrated database retrieval system
