Trachemys scripta elegans (red-eared slider): 117875464
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Entry
117875464 CDS
T07347
Symbol
LAMB1
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117875464 (LAMB1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117875464 (LAMB1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
ATG17_like
F5_F8_type_C
BNR_6
Motif
Other DBs
NCBI-GeneID:
117875464
NCBI-ProteinID:
XP_034622735
LinkDB
All DBs
Position
1:complement(27655707..27728425)
Genome browser
AA seq
1786 aa
AA seq
DB search
MGWLQAYLGALLGLWAAALAQEPEYSYGCAEGSCYPATGDLLIGRASQLFASSTCGLYRP
EPYCIVSHLQEDKKCFTCNSQFPFHETLNYDSHLIENVVTTFAPNRLKLWWQSENGLENV
TLQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWKVYRYFAYDCENSFPGVSTGP
MKKVDDIICDSRYSDIEPSTEGEVIYRALDPAFRIEDPYSPRIQNLLKITNLRISFTKLH
TLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVDGFNEEVEGMVHGHCMCR
HNTKGLNCELCLDFYHDLPWRPAEGRHSNACKKCNCNGHSIQCHFDMAVYMATGNTSGGV
CDDCQHNTMGRNCEQCKPFYFQHPEREIRDPNICEPCNCDPLGSQNGGICDRYTDFSAGL
IAGQCRCKLFVEGERCDLCKEGFYGLSADNPLGCQSCACNPLGTLPGGNPCDSETGSCYC
KRLATGKHCEQCLPEHWGLSNDMDGCRPCDCYQGGAINNNCSSETGQCQCRPHVIGRQCN
EVESGYYFMSLDHYIYEAEEANFGPGVSIVERQYSRDRTPSWTGVGFVRVPEGAYLEFYI
DNIPYSMEYDVVIRYEPQLPDHWEKAIITVSRPGKIPTSSRCGNTVPDDDNQTVSLSPSS
RYVVLPRPVCFEKGLNYTVRLELSQYSSFDTEVESPYTLIDSLILMPYCKSLDIFTVGGS
GEDVVTNSAWETFQRYRCLENSRSVVKTPMTDVCKNIIFSISALLHETALSCQCNPQGSL
SSVCDSNGGQCQCRPNVVGRRCDRCTPGTFGFGPNGCKSCECHLQGSVSSFCHPETGQCY
CFHGVYGRQCDRCLPGYWGFPSCQPCQCNGHTDDCDPYTGECLNCRDSTMGHNCERCLGG
YYGDPVLGSGDHCRPCPCPDGPESGRQFASSCYQDPITLQIVCVCNVGYIGSRCDECASG
FFGDPEETGGVCQPCQCNNNIDMTDPGACDKQSGKCLKCLYQTEGENCQLCKYGYYGHAL
QQDCRKCVCNYLGTVREHCNSSEDCQCEKTTGQCQCLPNVTGQNCDRCAPNTWRLASGTG
CELCECDVARSFEPSCNEFTGQCQCMPGFGGRTCRECQEFFWGDPNVACQACDCDPRGIQ
TPQCNRSTGLCVCKEGVEGPRCEKCTRGYSGIFPDCAPCHQCFALWDVIISELTNRTQRF
LERAKILKISGVSGPYQQTINTMEEKLNEIKSILAQNPAAEPLKNIGNLFEEAGKLTADV
TEKMAEIEDKLSVIALKSNNTDTHLRALETDAESLDLIVRELAEQLEFIKISDIRGALDS
ITKYFQMSLEAEERVNASTVHPDSLVELSAQTRQEVEDLISEQEAQFKAKQEEQSRLLDE
LAGKLQSLDLSEVAEKTCGTPSGASCADSECGGLNCRTDEGEKKCGGPGCEGLVTVAHGA
WQKAMDFDRDILSALAEVEELSKMVSEAKQRADEAKQNAQEVLLKTNATKEQVDRSNEDL
RNLIKQIREFLMQDSADLDSIEAVANEVLKMKMPSSPQQLQTLTEDIRERVESLSDVEII
LQQSAGDIARAEMLLDEANKASKSAKDVKVTAAIVKEALEEAEKAQNAAEKAIKQAEEDI
RGTQDLLTSIESENAASEETLNNATLRLTELEKSVEDLKQKAATNSENVEEIEETIATVK
QNAEEVKEVLDSELHANYKTVENLIAKKTEESADARKKAGMLQNEAKSLLAQANSKLQLL
KDLESTYENNQKVLEDKAKQLVELEETVRSLLQAISQKVAVYSTCL
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgggctggctccaggcgtaccttggcgctctcctagggctgtgggccgccgccctggct
caggagcccgagtacagctacgggtgcgccgagggcagttgctacccggccaccggcgac
ctgctgatcggccgcgcctcgcagctgttcgccagctccacgtgcgggctctacaggccc
gagccctattgcatcgtgagccatctccaggaggacaaaaaatgtttcacgtgcaattcc
cagttccccttccacgagactctcaactacgatagccatcttattgaaaatgtggtcaca
acatttgctccaaaccgtctcaagctgtggtggcagtcagaaaatggtttagaaaatgta
actctccagctggatctggaagctgaattccatttcactcatctcattatgaccttcaag
acattccgtccagctgcaatgctaatagaaagatcatctgattttggaaaaacctggaaa
gtatatagatactttgcatatgactgtgagaactccttccctggtgtttcaactggaccc
atgaagaaagtagacgatatcatttgtgattcccgatattctgacattgaaccgtcaacg
gagggagaggtcatatatcgtgctttagatccagcttttagaattgaagacccatatagt
ccaagaattcaaaacctattaaaaatcacaaatttaagaatcagtttcaccaagttacat
acgttgggagacaacctcttggattctagaatggaaatcaaagaaaagtactactatgcc
atttacgacatggtggttcgtgggaactgtttctgttatggccatgccagtgagtgtgca
ccagtggatggttttaatgaagaggtggaaggaatggtccatgggcactgcatgtgcaga
cataataccaaagggttaaactgtgaattgtgtttggatttctaccatgacttaccatgg
agaccagctgaaggacgccatagtaatgcatgtaaaaagtgcaattgtaatggacactct
atccagtgccattttgatatggctgtatacatggcaaccggaaataccagtggtggagtg
tgtgatgactgccagcataacacaatgggacgcaactgtgaacaatgcaaaccattttac
tttcagcatccagagagagagatacgagatcctaacatttgtgagccatgtaactgtgac
ccacttggctcccaaaatggtggaatatgtgatcgctacactgatttctctgctggcctt
attgctggacagtgccgctgtaaattatttgtggaaggggaacgttgcgacctctgcaaa
gaagggttctatggattaagtgcagataatccacttggttgtcaatcttgtgcctgtaat
cctttgggaactcttcctggagggaatccttgtgattcagagacaggaagctgctattgt
aaacgtctagcaacaggaaagcactgtgagcagtgtctgcctgaacactggggcctgagc
aatgacatggatggatgtcggccttgtgactgttaccaagggggagcaataaacaataac
tgctcaagtgaaactggccagtgtcagtgccgaccccatgtgattggacgccagtgcaat
gaagtggagtctggctattacttcatgtcattagaccactacatctatgaggcagaggaa
gccaactttggtcctggagtgagcatagttgaacgccagtattctcgagatcgtacccca
tcctggactggagtaggatttgtaagagtccctgaaggggcatatctggaattctatatc
gacaatattccatattctatggagtatgatgttgtgattcgctatgagccacagttacca
gatcactgggaaaaagctattattactgtttcacgcccaggcaagattcctacaagtagc
cgatgtggtaatactgttcctgacgatgataatcaaactgtatcattatcaccaagctca
agatatgttgtccttccacgccccgtatgttttgaaaagggactgaattacactgttcgc
ctggagctatcacagtactcctccttcgatactgaggtggaaagcccatacacactcatt
gactctctcattcttatgccttactgcaaatcgctggacatcttcacagtggggggctca
ggcgaagatgtggtcactaacagtgcttgggaaacatttcaaagatatcgatgtctggaa
aacagcaggagtgttgtgaaaacccctatgactgacgtctgcaagaatattatttttagc
atctctgcactgttacatgagaccgcgttatcttgccagtgcaaccctcaaggatcatta
agttcagtgtgtgactctaatggaggacagtgccagtgtcgtcctaatgttgttggaaga
agatgtgacagatgtactcctggcacctttgggtttggacctaatggatgcaaatcttgt
gaatgtcacttacaaggttctgtcagttccttctgtcatcctgagactggccagtgctac
tgtttccatggagtgtatggccgtcagtgtgataggtgcttacctggatactggggattt
ccaagctgtcagccttgccagtgtaatggccacacggatgactgtgacccatacactggg
gaatgtttgaattgccgtgattccaccatgggacacaactgtgaaaggtgccttggtggc
tattatggagaccctgtcctgggatcaggagatcattgtcggccttgtccttgcccagat
ggcccagaaagtgggcgtcagtttgctagcagctgttatcaagatcctattactctgcaa
attgtgtgtgtctgtaatgtgggatacataggaagcagatgtgatgagtgtgcttctggt
ttctttggagaccctgaagagacaggtggagtctgccagccgtgccagtgtaacaacaac
attgacatgactgacccaggggcctgtgacaagcagtctggaaagtgcctgaagtgcttg
tatcagacagagggtgaaaattgccagctgtgcaaatatgggtactatggacatgcattg
caacaggattgtagaaagtgcgtctgtaactacttgggaacagtgcgagagcactgcaat
agctcagaagactgtcagtgtgagaaaacaaccggtcagtgccaatgccttcccaatgtg
accgggcagaactgcgatcgctgtgcaccaaacacttggagactggccagtggaactgga
tgtgaactgtgcgagtgtgatgttgctcgttccttcgagccatcatgtaatgagttcact
gggcagtgtcagtgcatgcctgggtttggaggccgcacctgcagggagtgccaagagttt
ttctggggtgaccccaatgtggcatgccaagcttgtgattgtgatccccgtggaatccag
acacctcagtgcaatcgctccacggggctgtgcgtctgtaaggaaggtgtcgagggacct
cgctgtgaaaagtgcacccgcggctactccggcatcttccctgactgcgcgccatgtcat
caatgttttgctctgtgggacgtcatcattagtgaactgaccaataggacacagaggttc
ctggagagagcaaaaatcctgaaaatcagtggggtcagtggcccttaccagcaaactatc
aacactatggaagagaaactgaatgaaattaaaagtatcctggctcaaaatccagctgct
gagccccttaaaaacattggcaatctctttgaggaagcaggcaagctaacagcagatgtt
acagaaaagatggctgaaatagaagataagctctctgtgatagcgttaaaaagcaataac
acggacactcacctgagggccctggagacagatgcagagagcctagacctcattgtgaga
gaacttgcagaacaactcgagtttataaaaatctccgatatccggggagccttggatagt
atcaccaaatactttcagatgtccctggaggcagaagagagggtcaatgcctccactgtt
caccctgatagccttgtggaactgtcagctcagacacgacaggaagtggaagacttaatc
agtgagcaagaggcccagttcaaggcaaaacaagaggaacagtcgcgccttctggatgaa
ctcgcaggcaagctgcaaagtctggatctttctgaagtggctgagaagacatgtggaact
ccctcgggggcttcctgtgctgactcagagtgtggcggtctgaactgccgaacagatgaa
ggcgaaaagaaatgcggaggaccaggctgcgagggattggttactgtggctcacggtgcg
tggcagaaagccatggattttgacagagacatactcagtgcattggcggaagttgaagaa
ctctctaaaatggtctccgaggcaaaacagagagcagatgaggcaaaacaaaatgcacaa
gaagttctgctcaaaaccaatgccacaaaagagcaagtggacagaagcaatgaagatctg
agaaaccttattaagcagatcagggaatttctgatgcaggatagcgccgatttggatagc
attgaggcagttgctaatgaagtgttgaagatgaagatgccaagtagcccccagcagcta
cagaccctgacagaggatatccgtgagcgtgtggaaagcctttctgatgtagagattatc
ttacaacaaagtgccggagacattgccagagctgagatgctgttagatgaagcgaataaa
gcaagcaaaagtgcaaaagatgttaaagtcactgcagctatcgtgaaagaagcactggaa
gaagctgaaaaggcccaaaatgcagccgaaaaggccatcaaacaagctgaagaagacatt
agaggaacgcaggacctacttacctcaattgaatctgaaaatgcagcatctgaagaaacc
ttaaacaacgctaccctacgtcttactgagctagagaagagtgtggaagatcttaaacaa
aaggctgctacaaattcagagaatgtggaagagattgaagaaaccattgctactgtgaag
caaaatgccgaagaagttaaagaggtacttgacagtgaactgcatgccaactataaaaca
gttgaaaacctcattgccaaaaaaacagaagagtctgctgatgccaggaagaaagctgga
atgctgcagaatgaagctaaatcattgttagctcaagcaaacagcaaactccagctgctc
aaggatttggaaagcacgtatgagaacaatcagaaagtcttggaagacaaagccaaacag
ctggtggagctagaagaaacagtgcgctccctcttacaggcaatcagccagaaagttgca
gtatacagcacctgcttataa
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integrated database retrieval system
