Trachemys scripta elegans (red-eared slider): 117875580
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Entry
117875580 CDS
T07347
Symbol
VSX1
Name
(RefSeq) visual system homeobox 1
KO
K09335
visual system homeobox protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117875580 (VSX1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
117875580 (VSX1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
117875580
NCBI-ProteinID:
XP_034622847
LinkDB
All DBs
Position
3:2320152..2323739
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AA seq
350 aa
AA seq
DB search
MTGREEPAEGRAKGKALVPSAASEKAARLGAPALRSKGFAITDLLGLEAELQPPAAPVAG
AGCEGAGAGLGGVSLSGGSLPLGLGFLCGFAAPSPAGAPCLLPAHVPFLQPRPELHRPPG
PSAGGRQDNVSGKDEDSLSGDRGELKTSTAQIKRKKRRHRTVFTAHQLEELEKAFNEAHY
PDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPL
PESIINSAKSGLVGSCAPWLLGMHKKSMDVTRKPESEEKMTGSWRLEGPEEELKMKPSEH
QRSSGDKLSSMDNSEDTAIDLSSTAKQENRNALRQCLKGDLQTDGKDNGH
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgacgggccgggaggagcccgccgagggcagagccaaggggaaggcgctggtgcccagc
gcggccagcgagaaggcggcccggctgggcgccccggcgctgcgctccaagggcttcgcc
atcaccgacctgctggggctggaggccgagctgcagccgccggccgcccccgtggccggc
gcgggatgcgagggcgccggggccggacttgggggggtgtctctgagcggtggctccttg
cccctgggcttgggcttcctctgcggcttcgcggcgccgtccccggccggagccccctgc
ctgctgccggcgcacgtcccgttcctgcagccccggccggagctgcaccggccccccgga
ccctccgccggcgggcgccaggacaacgtctccggtaaggacgaggacagcctgtccggg
gacaggggcgagctgaagacctcgactgcccagatcaagaggaagaagcgccggcacagg
acggtgtttactgctcaccagctcgaggagttagaaaaggctttcaatgaagcccattac
ccagacgtgtatgcccgggaaatgctagctatgaaaacagagctgcccgaggacaggatc
caggtctggtttcagaaccgaagagccaagtggaggaagcgggagaagtgctggggcagg
agcagtgtcatggccgagtacggtctctatggggccatggtgaggcactccatccctcta
cctgagtcaatcatcaactcagccaaaagtgggctggtgggctcctgtgctccttggctg
cttgggatgcataaaaaatccatggatgttacaagaaagccagagagcgaggagaagatg
acaggcagctggagattggaaggtcctgaggaggaattaaaaatgaagccatcagaacac
cagagaagctctggtgacaaactcagctctatggacaattcagaagatacagcgattgac
ctctctagcacagcaaagcaagagaacaggaatgctttgaggcaatgtctcaaaggagac
ctccagacagatgggaaggacaatggccactaa
DBGET
integrated database retrieval system
