Trachemys scripta elegans (red-eared slider): 117875755
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Entry
117875755 CDS
T07347
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
117875755 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117875755 (RAG1)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117875755 (RAG1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117875755 (RAG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_2
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117875755
NCBI-ProteinID:
XP_034623001
LinkDB
All DBs
Position
4:complement(79169541..79180113)
Genome browser
AA seq
1044 aa
AA seq
DB search
MDVLTSPSMGLHTMPEEIQHPYTKFSEWKFKLFKVRSFEKAPSGDNQVANKEKVASLDKG
TMVQMDVAVPVAEKPLLADTDLNHNKQALEKDADNLKMQENAAHQANLQQLCRICGVSFK
TDRYKRSHPVHGPVDSETQGLLRKKEKRATSWPDLIAKVFKIDVRGDIDTIHPTRFCHNC
WSIIHRKFSNAPCEVYFPRNSTMDWKSHSPNCTVCYTARRGVKRKNQPSNLQLGKRLKII
AERARKTKGVKKQVQVNNKNLMKKIANCKKIHLSPKLLAVDYPADFVKSISCQVCEHILA
DPVETTCSHLFCRTCILKCLKVMGSYCPSCRYPCFPTDLVSPVKSFLNILNSLAVRCPVK
ECDEEVLLGKYCHHLSSHKEVKRKEIYTHVNKGGRPRQHLLSLTRRAQKHRLRELKLQVK
AFAEKEEGGDIKSVCLTLFLLALRARNEHRQADELEAIMQGKGSGLHPAVCLAIRVNTFL
SCSQYHKMYRTVKAITGRQIFQPLHALRTAEKALLPGYHPFEWKPPLKNVSTNTEVGIID
GLSGLPHSVDDYPIDTIAKRFRYDAALVSALMDMEEDILEGMKAQDLDDYLNGPFTVVVK
ESCDGMGDVSEKHGSGPAVPEKAVRFSFTLMNISIAHGNENVRIFEEVKPNSELCCKPLC
LMLADESDHETLTAILSPLIAERETMKSSVLLLEMGGILRTFKFIFRGTGYDEKLVREVE
GLEASGSTYICTLCDATRLEASQNLVLHSITRSHAENLERYEVWRSNPYNESVDELRDRV
KGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQFEIGEVYKNPDISKEERKRWQSTLDKH
LRKKMNLKPIMRMNGNFARKLMTKETVEAVCELIKCEERHEALRDLMDLYLKMKPVWRSS
CPAKECPELLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAW
ASEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNTLKSQGFTI
DPEQSLEDSLALENTLEMTDSMAF
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgctgacgtcaccaagcatgggcctgcacaccatgccggaagaaatccagcac
ccatatactaaattttctgaatggaagttcaagctgtttaaagtgagatcattcgaaaag
gcaccttctggagacaaccaagtggcaaataaagagaaggtggcctctttggacaaaggc
actatggtgcagatggatgtggcagttccagtggcagaaaagccacttctggcagataca
gacttaaatcacaataagcaggctctcgaaaaagatgctgacaacctgaaaatgcaagag
aatgcagctcatcaagcaaacctgcagcagctctgccgcatctgtggagtttcatttaaa
actgatcgctacaagagaagtcatcctgtgcatggaccagtggacagtgaaactcaggga
cttctgagaaagaaagagaaaagagcaacatcttggccggatcttattgccaaggttttt
aagattgacgtgcgaggagatatcgacacaatccaccccactcggttttgtcacaactgc
tggagcatcatccacagaaagttcagcaatgccccatgtgaagtgtatttcccgaggaac
agcaccatggattggaagtcccactccccaaactgcactgtttgttatactgctcgtcgt
ggggtcaagagaaagaaccagccatccaatttacagctgggcaaaaggctcaagatcatt
gcagaacgtgcccgaaaaactaaaggtgtaaaaaaacaagtacaggtgaacaacaaaaac
cttatgaaaaagattgccaactgcaagaagatacatcttagccccaaacttcttgcagtt
gactaccctgcagatttcgttaagtccatctcttgccaggtctgtgagcatattctggca
gacccagtggaaacaacatgtagtcacttattctgcagaacctgcatccttaagtgcctc
aaagttatgggcagctattgtccctcctgccgatacccttgcttccctacggacctggtg
agtccagtgaaatccttcctgaacatcctcaattccctggctgtgcgatgcccagtgaaa
gaatgtgatgaggaggttttgttgggcaaatactgccatcatctctccagccacaaagag
gtgaaaaggaaagagatttacacgcacgtaaataaaggcggccgaccgaggcaacactta
ctctcattgaccaggagagcgcaaaagcatcgtctgagagaactcaagcttcaagtcaaa
gcttttgctgagaaagaagaaggaggtgatataaagtctgtgtgcctaaccttgttcctg
ctggctctgagagcaagaaatgaacacagacaagcagatgagttggaagcaataatgcaa
gggaagggatcagggcttcacccagctgtttgcctggcaatccgagtcaacacctttctc
agctgtagccagtaccataaaatgtacagaactgtaaaagctataactgggaggcagatc
ttccagccattgcatgctctccgcactgctgagaaggcactcttgccaggttatcatcca
tttgagtggaaaccccctttgaaaaatgtgtccactaatacagaagtgggaattatagat
gggctatcagggctgccacactcagttgatgactacccaatagacacgattgccaagagg
tttcgatatgatgcagccttggtttctgccttaatggacatggaggaagacattttggaa
ggcatgaaagcacaagacctggatgactatttgaatggccccttcactgtagtggtgaag
gagtcttgtgatgggatgggagatgtcagtgagaagcatggaagtggaccagctgtccct
gagaaggcagttcgattttctttcacgctcatgaacatcagtatagctcatggtaatgaa
aatgtaaggatctttgaagaagtcaagcccaattcagagctgtgttgcaagcccttgtgc
cttatgctggccgatgaatcggaccatgagactctgacagccatcctgagccctctcata
gcagaaagagagaccatgaaaagcagcgttctgcttcttgaaatgggaggcatcctcaga
acattcaaatttatctttaggggtacagggtatgatgagaaacttgtccgtgaagtggaa
ggccttgaagcctcaggctctacttacatctgcaccctttgtgatgcaacccgcctggaa
gcctctcagaacttggtcctccactccataacaagaagtcatgctgaaaacctggagcgg
tatgaggtatggaggtccaacccatataatgaatctgttgatgagttacgtgatagagtg
aagggtgtttctgccaaaccttttattgagactgttccttccatagatgcactgcattgt
gacattggcaatgcggctgagttctacaagatattccagtttgagataggtgaggtgtac
aagaaccctgacatatctaaagaagagaggaagaggtggcagtcgactcttgacaagcac
cttaggaagaagatgaacctgaagcccataatgaggatgaatggaaactttgctagaaag
cttatgaccaaagagacagtggaagcagtatgtgaattaataaagtgtgaggaaaggcat
gaagccctaagagacctgatggacctttatcttaagatgaaaccagtgtggaggtcttca
tgcccagccaaagagtgcccagaattgctgtgtcagtatagcttcaactcacaacgtttt
gctgagctcctgtccacaaagttcaagtacagatatgagggcaagattacgaattacttt
cacaaaactcttgctcatgttcctgaaatcattgaaagagatggctccattggcgcctgg
gcaagtgaagggaatgaatctgggaacaaattatttaggcgtttccgaaaaatgaatgcc
aggcagtcaaaatgctatgaaatggaggatgtcttgaagcaccactggctgtatacctct
aagtacctgcagaagttcatgaatgcccataatacattgaaaagtcagggcttcacaatc
gatccagagcagagtttagaagactctctggcattggaaaacactttagaaatgactgat
tctatggcattctaa
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integrated database retrieval system
