Trachemys scripta elegans (red-eared slider): 117875987
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Entry
117875987 CDS
T07347
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03420
Nucleotide excision repair
tst04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117875987 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
117875987 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117875987 (DDB1)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117875987 (DDB1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
117875987 (DDB1)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117875987 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
117875987 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
117875987
NCBI-ProteinID:
XP_034623533
LinkDB
All DBs
Position
4:133511836..133532634
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSSEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFHPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVSLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVT
QEPKALVSEWKEPKGKNISVASCNSSQVVVAVGRALYYLEIQPQELRQISCTEMEHEVAC
LDITPLGDSSGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccaacggctgtgaacggctgcgtcacc
gggcacttcacgtcctcggaggacctgaacctgctgatagcgaagaacacacgccttgag
atctatgtggtcacggcagaggggctgcggcccgtcaaggaggtgggcatgtatggcaag
atcgcagtcatggagcttttccacccaaagggggagagcaaggacctgctgttcatcttg
acagccaaatataatgcctgtatccttgagtacaagcaaagtggtgagagcattgatatc
atcacccgagcccatggcaatgtgcaggatcgcattggtcggccctcagagacgggtata
attggcataattgacccagagtgtcggatgattggattgcggctctatgatggcctcttc
aaggtcattcctctggaccgggacaacaaggagttaaaggcctttaacatccgcctggag
gagctgcaggtcatcgatgtcaaattcctctatggctgccaggctcctaccatctgcttt
gtttaccaggatccccagggccgccatgtcaaaacatacgaggtatccctgcgagagaag
gaattcaacaagggtccctggaaacaggagaatgtagaggccgaagcgtccatggtaatt
gcagtgcccgagccctttggaggagctatcatcattgggcaagagtccatcacctaccac
aatggcgataaatatctggctatagccccacccatcataaagcaaagtacaatagtgtgc
cacaaccgtgtggatcccaatgggtcccgttacctcctgggggatatggagggccgtctc
ttcatgctgcttctggagaaggaagagcagatggatggcacggtcagcctgaaggacctg
cgtgtggagctgcttggagagacatccattgcagagtgcctgacctacctagataatggt
gttgtctttgtcggctctcggcttggggactcccaactcgtgaagctcagtgtggacagc
aatgaacaaggctcctatgtagtggccatggaaaccttcaccaacctgggccccatcgtg
gacatgtgtgtggtggatctggagagacagggtcaagggcagctggtcacatgctctggc
gcctttaaggagggctccctgaggatcatccggaacgggattgggattcacgaacacgcc
agcatcgacctgccaggaattaaaggcctatggcccctgaggtcagattcacatcgtgaa
accgacaacaccttggtgctgtcctttgtaggccagaccagggttctgatgttaaacggg
gaggaagtggaggaaactgagttgacaggattcgtggatgatcagcaaacattcttctgt
ggcaacgtagcccatcagcaactgatccagatcacctctgcctccgtgcggctggtcact
caggagcccaaagccctcgtgagtgaatggaaagagcccaaggggaagaacatcagcgtg
gcttcctgtaacagcagtcaggtggtggtggctgtggggcgagcactttactacctggag
atccagccccaggagctcaggcaaataagctgcacagagatggagcatgaggtggcctgc
ctggacattaccccactgggggactctagtggcatgtcccctctgtgtgccatcggcctc
tggactgacatttcagcccgcatcctaaagctgccctcgtttgagctgctgcacaaggag
atgctgggaggagagatcattccccgctccattctgatgaccacctttgagagcagccac
tatctcctctgcgccctgggagatggggctctcttctactttgggctcagcattgagaca
ggtttgctgagcgaccgtaagaaagtgacgctgggcacccagcccactgtcctaaggaca
ttccgttcactctccaccaccaatgtctttgcctgctctgaccgccccactgtgatctac
agcagtaaccacaagctggtcttctccaatgtcaacctcaaggaggtgaactacatgtgt
cccctcaactcggatggctaccctgacagtctggcattggccaacaacagcaccctgaca
attggcaccatcgacgagatccagaagctgcacatccgcacggttcccctctacgagtcg
cccaggaagatctgctaccaggaggtttctcagtgctttggcgtgctttcaagtcgcatt
gaggtgcaggatgccagtgggggcaccactgcactgagacccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttttccagcagcaccgctccgcacgagaca
tccttcggagaggaggtggaggtgcacaatctactcatcatagaccagcacacctttgaa
gtgctccacgctcaccagttcctgcagaatgaatacgccctaagcctggtctcctgcaag
ctgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtatcctgaggag
gctgagcccaaacagggtcgcattgtagtcttccactactcagatgggaaactgcagagt
ctggccgagaaggaagtgaaaggggctgtgtattccatggtggagttcaacggcaagctc
ctagccagcatcaacagcacggtgcgtctgtatgagtggacggcagagaaggagctgcgc
acagagtgtaaccattataataacatcatggctctctacgtaaagaccaagggggacttc
atcctggttggagatctgatgcgctctgtcctgcttctcgcctacaagcccatggagggt
aactttgaggagattgctcgagacttcaacccaaactggatgagcgctgtggagatcttg
gacgatgacaacttcctgggagcagagaatgcttttaacctgtttgtgtgccagaaggac
agcgctgccacgaccgatgaggagcgccagcacttgcaggaagtggggctgttccacctg
ggggagtttgtcaacgtgttctgccatggctccctggtcatgcagaacctgggcgagacg
tccacaccaacgcagggctcggtgctcttcggcacagtcaacggaatgattggactggtg
acgtcactgtcggaaagctggtacaacctcctgctggatatgcagaacagactcaataaa
gtcatcaagagtgtgggcaagattgagcactccttctggagatcatttcacactgagcgc
aagacggagccagccacagggttcattgatggtgacttgattgaaagcttcctggacatc
agccggcccaaaatgcaggaggtggtagcaaacttacagattgacgatggcagtggcatg
aagagagaggccaccgtggacgacctgataaagatcgtggaggagctgacccggatccat
taa
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integrated database retrieval system
