Trachemys scripta elegans (red-eared slider): 117875992
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Entry
117875992 CDS
T07347
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04137
Mitophagy - animal
tst04140
Autophagy - animal
tst04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117875992 (HIF1A)
04137 Mitophagy - animal
117875992 (HIF1A)
04148 Efferocytosis
117875992 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117875992 (HIF1A)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117875992 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
DUF2121
Motif
Other DBs
NCBI-GeneID:
117875992
NCBI-ProteinID:
XP_034623551
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Position
4:14685139..14729329
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AA seq
806 aa
AA seq
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MELSGEKKRISSDRRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIMRLT
ISYLRMRKLLDASDLETEAKMEKEMNCFYLKALDGFVMVLSEDGDMIYMSENVNKCMGLT
QFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGRTVN
IKSATWKVLHCTGHVRVYDACNNQTLCGYKKPPMTCLVLICVPIPHPSNIEVPLDSKTFL
SRHSLDMKFSYCDERITELMGYEPEELLGHSIYEYYHALDSDHLTKTHHDMFTKGQVTTG
QYRMLAKHGGYVWVETQATVIYSTKNSQPQCIVCVNYVLSEIVQKELFLSLAQTECVLKP
VESPDMKIFSKADLEDTNSLFEKLKKEPDALTLLAPAPGDTIISLDFSSNESDEQQYDEV
PLYNDVMLPSSSEKLKNINLAMSPLPASEITKPLRSNADPALNREVVSKLEPNTEPLELA
FSSHQRQGQPASPSDASTNQSSPEPRSPNDYCFDVDNDMANEFKLELVEKLFAIDTEAKN
PFSTQETDLDLEMLAPYIPMDDDFQLRSFDQPPSLESGCASSQSVATNTIFQQTHALSTA
AEEVTPVKTECMDDIKTLIVSQSPVLIINETNSAPASPYGANRSRTASPIRAGKGTLDQM
EKSYPGTPNLLTVTLSKRSAAMDEELNPKMLALHNSQRKRKMDYDGSLFQAVGIGSLFQQ
SEDCGANASLCWKRVKGCKSNGQNGVGQKTIILLSTDIASKLLGQSMDETGLPQLTSYDC
EVNAPIQGSRNLLQGEELLRALDQVN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggagctcagcggcgagaagaaaaggattagttcagatcgcagaaaggagaagtctaga
gatgcagccagatgccgaagaagcaaggaatctgaggtcttctatgaacttgctcaccag
ctgcctcttcctcatactgtcagtgcacaccttgacaaggcctccattatgaggctgact
atcagctacttgcgcatgagaaagctgttagatgcaagtgacctggagacagaagccaaa
atggagaaggagatgaattgcttttacttaaaagcccttgatggatttgtcatggttctt
tccgaggatggtgacatgatttacatgtctgaaaatgtgaacaagtgtatggggctcact
cagtttgagctgactgggcacagtgtgttcgattttacccacccatgtgaccatgaagag
ctgagagaaatgctgacgcacagaaatggtcctgtgaaaaagggcaaagaacagaataca
gagcgtagctttttcctcagaatgaagtgtacactgaccagcaggggaaggacagtaaat
ataaagtctgcaacatggaaggtacttcactgtacagggcatgttcgtgtgtatgatgcc
tgcaataatcagactctctgtggatataaaaagcctcccatgacatgcttggtgttgatt
tgtgtacctatccctcatccatcaaacattgaagtccctttggacagcaagacattcctc
agtcgccacagcctggatatgaaattttcgtattgtgatgaaagaattacagagctgatg
ggatatgagccagaagaactcttgggtcactccatctatgaatactatcatgctctggac
tctgatcatctgaccaaaactcatcatgatatgttcactaaagggcaagtgactacagga
cagtacagaatgcttgctaagcatggtggatatgtctgggttgaaactcaagcaactgtt
atatacagcactaagaattcccaaccacagtgcatagtgtgcgtaaattacgtcttgagt
gaaattgtacagaaggagttatttctttcccttgcacaaacggagtgcgtgctgaaacca
gtggagtctcctgatatgaaaatattcagcaaggctgacctagaagatactaacagcctc
tttgaaaaacttaaaaaggaaccagatgctttaactttgctcgcaccagctcctggagac
acgattatctctttagatttcagcagtaatgagtctgatgagcaacagtatgatgaagtt
cctttgtataatgatgtaatgctcccctcatccagtgagaaattgaagaatataaatttg
gcaatgtccccacttcctgcctctgaaattacaaagccacttcgtagcaatgctgaccct
gcactcaatagagaagttgtatcaaaactggagccaaacacagagccactagaacttgca
ttttccagccaccagaggcaaggccagccagccagcccttctgatgcaagcactaaccaa
agttcacctgagccccgtagtcccaatgactattgctttgacgtggataatgatatggct
aatgagtttaagctggaattagtggaaaaactctttgcaatagacacagaagcgaaaaat
ccattctctactcaggaaactgatttagacttggagatgttagctccttacatcccaatg
gatgacgacttccagttacgatcctttgatcagccgccttcactggagagtggttgcgcc
agctctcagagtgtggccaccaataccatatttcagcaaacccacgcactgtctactgcc
gctgaggaagtaacaccagtgaaaacagaatgcatggatgacattaagactctcattgtt
tctcagtctcctgtcctcataatcaatgaaaccaacagcgccccagcatcaccatatggt
gcaaatcgaagtcgaactgcatctccaatcagggctggaaaaggaacattggaccagatg
gagaaatcttatccaggaacacccaatttgttaacagtcactttgagtaaaagatctgct
gcaatggatgaagaactgaatccaaagatgctagctttgcataactctcagagaaagcga
aagatggactatgatggctcactttttcaagcagtgggaattggatctttattccagcag
tcagaagattgtggagcgaatgcatcactttgttggaaacgtgtaaaagggtgcaaatct
aatggccagaatggagtgggacaaaagacaatcatcttattatcaactgatatagcaagt
aagctcctagggcagtcaatggatgagactggactaccacaacttaccagttatgattgc
gaagtaaatgctcccatacaaggcagcagaaacctgctacagggtgaagaattgctcaga
gctctggatcaagttaactga
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