Trachemys scripta elegans (red-eared slider): 117876002
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Entry
117876002 CDS
T07347
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
tst04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117876002 (PRPF19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117876002 (PRPF19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117876002 (PRPF19)
04121 Ubiquitin system [BR:
tst04121
]
117876002 (PRPF19)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117876002 (PRPF19)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117876002 (PRPF19)
Spliceosome [BR:
tst03041
]
Complex B
Other components
Prp19 complex
117876002 (PRPF19)
Complex C
Prp19-CDC5 complex
117876002 (PRPF19)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
U-box type E3
117876002 (PRPF19)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
117876002 (PRPF19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
U-box
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
PROPPIN
Beta-prop_Nup120_160
Cytochrom_D1
Ge1_WD40
eIF2A
zf-Nse
Beta-prop_DCAF12
RMC1_N
Beta-prop_WDR35_TULP_N
DUF1830
DUF4550
ATG16
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
117876002
NCBI-ProteinID:
XP_034623572
LinkDB
All DBs
Position
4:133881535..133889945
Genome browser
AA seq
504 aa
AA seq
DB search
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPNITGAGEPMDLGELAGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVIVFDKSSEQILATLKGHAKKVTSVVFHPSQELVFSASPDATIRIWSVPSATCVQ
FVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcatatgctcgatctcaaatgaggtgccagagcacccctgcgtgtctccggtc
tcaaaccacgtctatgagcgaagactgattgaaaagtacattgcggagaatgggactgac
ccagtgaacaaccagccgctgtctgaagagcaactgatcgacatcaaagttgcccaccca
atccggcccaagccaccctcggccaccagcatcccggccattctgaaagcccttcaggat
gagtgggacgccgttatgctgcacagcttcacgctccgccagcagctgcagaccacccgc
caggagctgtcgcacgcactgtaccagcacgatgctgcctgccgcgtcattgcccgtctc
accaaagaggtcactgctgccagagaagcgttggcgactctgaaaccccaggctggcctc
atagtcccccaggctgtgccgtcttcccagcccaacatcacgggtgctggcgagccgatg
gatctgggagagctggcaggcatgacccccgagatcatccagaagcttcaagacaaagcc
acggtgctgaccacggagcgtaagaagagaggcaagacggttccagaggagctggtgaag
ccagaggagctcagcaagtatcgacaggtggcctcgcatgtgggcttgcacagcgccagc
atcccagggatcctcgctctggacctctgtccttccgacaccaacaagatcctcaccggc
ggggcggataaaaatgtcatcgtctttgacaagagctcggagcagatcctggcgacgctc
aaagggcacgccaagaaggtcaccagtgtggtgttccatccgtcccaggagctggtgttc
tctgcttctcctgatgccactatccggatttggtcggtcccaagtgccacttgcgtgcag
tttgtccgggcccatgagagcgccgtgacagggctgagtttgcatgctaccggcgactat
ctcctgagctcctctgatgaccagtactgggctttctctgatatccagacgggccgcgtg
ctcaccaaggtcacagatgagacctctggctgcgctctcacctgtgctcagttccaccct
gatgggctcatttttgggacggggactatggactctcaaatcaagatctgggacttgaag
gaacgcaccaatgtggccaacttcccagggcactccggtcccatcaccagcatcgcattc
tcagagaacggctactacctggccacggccgctgacgactcctctgtcaaactctgggat
ctgcgcaagctcaagaacttcaagacgctgcagctggacaataactttgaggtgaagtcc
ctcatatttgaccagagcggtacatacttggccctgggtggcacagacgtccagatctac
atctgcaagcagtggacggaaatcctccacttcacagagcacagtggcctgactacgggt
gtggcctttggccaccatgctaaattcatcgcttccacgggcatggacaggagcctgaag
ttctacagtctgtag
DBGET
integrated database retrieval system
