Trachemys scripta elegans (red-eared slider): 117876014
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Entry
117876014 CDS
T07347
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117876014 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117876014 (PATL1)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117876014 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
117876014 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117876014
NCBI-ProteinID:
XP_034623593
LinkDB
All DBs
Position
4:134683519..>134694325
Genome browser
AA seq
805 aa
AA seq
DB search
MYVFRDGEACVARGGGSEPERGPRGASLAVGVSAPRTMFRYQSLEDCPLDEDAFQTLGEE
DEDIDQFNDDTFGAGAIDDDWQEAHERLAELEDKPATARELEDGAVSDEMDLLGHHEENL
AERLSKLVIENELEDPAIMQAVQTQPPMQQPGGLNSSIWDGSAVLRRIRGPLLTQEMPSV
SVLEYAMPQRPPQGQEDERDLSERALPRRSSSPVIGSPPVRAVPIGTPPKQAAVPNFNQQ
ILCPKPVHIRAPMQQRYPSPYSERMSPNQLCNVPNSSLLGHPFPPSVTPVFTHLQRAQLL
GGAQAGRMSPSQFARVSGLVGSPLTSMNPKLLQGRVGQMMSPASGFRAFFGAPPPSAPPP
SQQQQHPPCPGSHLQNLRPHPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSAGDR
AGHRSSQQEQLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFQKLEKVSA
AEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRS
EDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALMEERKQKICDM
YDNLRGKTPGQERPSDDHFVQIMCIRKGKRMVARILPFLSMEQAADILMTTARNLPFLIK
KDAQDEVLLCLLRPFSLVLYHLPSGTVTSLLQQLANLPQSVMAPAPANLHLAAVLQNKFG
LSLLYLVLSRGEELQNSNAGTELMQDNQWTELMSMTTRELLRIPEAALAKPVSTPSNLLS
LFSRYVDQQKLNVLETKLQLVQGIR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgttccgtgacggcgaagcgtgcgtagcgaggggcgggggctcggagccggag
cggggtccgcgcggggcctccctggcggtgggagtctccgcgccgcgcaccatgttccgc
taccagtccctggaggactgtcctctggatgaagatgcctttcagaccctgggtgaggag
gatgaagatatcgaccagttcaatgatgacacgtttggagccggtgctattgatgatgac
tggcaggaggcacatgaacggcttgcagaactggaagacaagcctgcgacagctagagag
ctggaagatggggcggtcagtgatgagatggacctgctggggcaccatgaggagaacctg
gccgagaggctgagcaagctggtcattgagaacgagttggaagatccagccatcatgcag
gctgtgcaaacccagcctccaatgcagcagccaggaggcctcaactccagcatctgggat
ggatccgcagttctgaggcgcatccgaggaccacttctcactcaggagatgccctcggtg
tctgtgctggaatatgctatgcctcagagacccccgcagggccaggaggatgagcgggac
ctctcggagcgggcactgcccaggcgctcgtcctccccagtcattgggagcccccctgtc
agggctgtccccatcggcaccccaccaaagcaggctgccgtgcccaacttcaaccagcag
atcctgtgtccaaagcctgttcacatccgggccccgatgcaacagcgttatccttccccc
tacagcgagaggatgtccccaaaccagctctgcaatgtcccgaattcttccctcctgggc
cacccgttccctcccagcgtcactcccgttttcacccaccttcagagagcgcagcttcta
ggaggagcacaggctggacgaatgtctcctagccagtttgctcgtgtctctggactcgtt
ggcagccccctcacatccatgaaccccaagttgcttcaaggcagagttgggcagatgatg
tctccagccagtgggttccgtgccttttttggggcgccaccaccttccgcgccaccccca
tcccagcagcagcagcaccccccatgtcctgggtcccacttgcagaacctaaggcctcac
ccgcagatgttcagaccagatacaactcaccttcacccgcagcatcggcggctcttacat
cagagacagcagcagaacaggaaccagcaccggagtttgaatggctcagcaggggaccga
gctggccaccggagcagccagcaggagcagctgcggaaggacccctatgccaatctcatg
ttgcagcgggaaaaggactgggtatcaaagatccagatgatgcagttgcaaagcactgac
ccttacctggatgacttctactatcagaattacttccagaagctggagaaagtgtcagcg
gcagaggagatgcacggcgatggccccaagaaagaacgtactaaactcatcacaccccag
gtggccaagttagagcatgcctacaagccagtgcagtttgagggctcgctggggaagctc
acagtctccagtgtaaataacccccggaaaatgattgatgcggtggtgacctcccgcagc
gaggacgacgagacgaaggagaagcaggttcgagacaagagacgtcagaccctcgtcacc
attgagaagacgtacagtctcctcctggatgtggaggactacgagaggcgctacctcctg
agcctggagggggagcggccggccctgatggaggagagaaagcagaagatctgtgacatg
tatgacaatctgagggggaaaacacctggccaagagaggccaagtgatgaccactttgtg
caaatcatgtgtatccggaaagggaagcgtatggttgcccggatcctgccttttctgtcc
atggagcaagcggctgacatactcatgacaacagccagaaatctgcccttcctgatcaag
aaggatgctcaggatgaggtgctgctgtgcctgttgaggcccttctctctcgttctctat
catcttccgtcggggacagtcaccagccttctgcagcagctagcgaacctacctcagagc
gtcatggcgccagcacctgccaacctgcacctcgcagctgtgctccagaacaagtttggc
ctgtccctgctgtacttggtcctgagtcgtggggaggaattgcagaattccaatgctggt
acggagctaatgcaggacaaccagtggacagagctgatgtccatgacaacccgagagctt
ctgcggatccccgaagcagcgctggcaaagccagtatccaccccttctaatctgctgtcc
cttttttctcgctatgttgatcagcagaagctgaacgtgctggagacaaagttgcagtta
gtgcaggggatacggtag
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integrated database retrieval system
