Trachemys scripta elegans (red-eared slider): 117876238
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Entry
117876238 CDS
T07347
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-D-like
KO
K06461
integrin alpha M
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04145
Phagosome
tst04514
Cell adhesion molecules
tst04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117876238
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117876238
09142 Cell motility
04810 Regulation of actin cytoskeleton
117876238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117876238
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117876238
04515 Cell adhesion molecules [BR:
tst04515
]
117876238
04090 CD molecules [BR:
tst04090
]
117876238
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117876238
Membrane trafficking [BR:
tst04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
117876238
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117876238
Cell adhesion molecules [BR:
tst04515
]
Integrins
Integrin alpha subunits
117876238
CD molecules [BR:
tst04090
]
Proteins
117876238
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
117876238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ITGAX-like_Ig_3
VWA
FG-GAP
VWA_2
Integrin_A_Ig_1
FG-GAP_3
Integrin_A_Ig_3
FG-GAP_2
DUF3866
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
117876238
NCBI-ProteinID:
XP_034624079
LinkDB
All DBs
Position
4:complement(141395938..141475129)
Genome browser
AA seq
977 aa
AA seq
DB search
MDPLPLLLYLCAVLAPSHGFSVDVEGPITFQEAAEGFGQSVLQFGNASAGGLIVGASLQT
GNVNETGKVYKCDPDSRRCQEIPIQRPLDAMYMSLSLSLAAQGSQFLVCGPMVHRACGEN
KYVSHYCFPLQQSFSQLQRILDTQPECPKHVTDIVLLIDGSGSIAPVGFGKMKTFLSEIM
KHFDSTDTQFALMQYSNKFKLHFDFMEYRKSRDPNHLLQGVEQLHGTTYTATAIRKVVRE
LFTSGRGARDEATKVLIVITDGEKYNDPLSYSDAIPEAERAGIIRYTIGVGEAFSSDTAQ
QELQEIASKPSNEHVFQVDNFDALQGIQNQLQKKICTFKGYSSQVITANGQSTYMVGAPL
CQDTGKVLLFSRDTKGGEWTPGSELLGEQIGLYYGGTLCSVDLDRDGNTDLVLIGAPLYR
TPLNGGLVYICQMNLPGMMMICNKTLHGQMGEVSGHFGASMSEIGDISGDGQTDVAIGAP
MENDNNGALYIFHGEKGGLSPQYRQRIEGSRFSSRLHYFGQAVSGGTDLTGDGLPDIVVG
AQGQVLLLRSRPVLRVGVSISFQPPTIPTSAFDCQGQEQLNTEASRAKVCFTVTKSTMDS
LGDRISSTIQYSLALDSGRTKIRAAFDATGPVLSRELRLGIKKKCETYRITIPLCPEDTV
TPITLHLNYTLTGEPIAAAGDLRPILSEDSVLASAGSLPFQKDCGTDGRCDDQLAVSFNF
SGLEESTKYVNFSTKEAGTSVPVTHRYEVKNLRQRSVPISVTFQFPVELSGVRVWDASEV
VPSKPELAQCTNDVETPDSKDFVKQMSDRPLLDCSVATCKKIRCRIASLEMQQPLEFMIK
GNVSFQWVSQTQQQKVSLVSEARIEYEEKKYTQKEGFVQRQVQTVVERSEVVGSSVXGLI
LLALITAALYKFGFFKRQYKQRVKDAVEGEGPLLTQSATTGNSPASNAPGTERCSAGYWA
CIRPVHSLHRLPFRSNS
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggaccccctgcctctgctcctctacctgtgcgcagtgctggcaccgagccatggattc
agcgtggacgtggaaggacccatcaccttccaggaggcagctgaggggtttgggcagagt
gtgttgcagttcgggaatgccagcgctggggggctgatcgtcggggcctcactgcagaca
ggaaacgtgaatgaaactggcaaagtctacaagtgcgacccggactccagacgctgccag
gagatccccatccagaggccccttgatgccatgtacatgtccctcagtttgtctctggct
gcccaaggctcccagttcctggtgtgcggccccatggtgcaccgggcttgtggggagaac
aagtacgtcagtcactactgcttccctctgcagcagagcttctcgcaactccagcgcatc
ctggacacccagccagagtgccccaaacatgtcacagacatagtgctcctcatcgacggc
tcgggcagcatcgcacctgtgggctttggaaagatgaagacgtttctctctgagatcatg
aagcatttcgacagcactgacacgcagttcgccctcatgcagtactccaataaatttaaa
ttgcacttcgacttcatggagtacaggaagagtcgtgaccctaatcaccttctccagggg
gttgagcagcttcatggaacgacgtacacggccacagccatccggaaagtggtgcgggag
ctgttcacctctgggagaggcgctcgggatgaagccaccaaggttctcattgtgatcaca
gatggggagaaatacaatgacccactttcttattcagatgccatacctgaggctgagaga
gctgggatcatccgctacaccatcggggtcggcgaggccttctccagtgatactgcccaa
caggagctccaggagattgcctctaagcccagcaacgagcacgtcttccaggtggacaat
tttgacgccctccagggcatccagaaccagctgcagaagaagatctgcaccttcaaaggt
tattcatctcaggtcatcacagccaatgggcagagcacctatatggtcggggcccctcta
tgccaagacaccggcaaagtcctcctgttcagccgagataccaagggtggggaatggaca
cccggatcggagctgttgggagagcagattggtttgtattacgggggtacactgtgctct
gtggacctcgacagagatgggaacacggacctggttctaatcggagcccctttgtaccgt
acacctctgaatggaggactggtctatatctgtcagatgaacttgccggggatgatgatg
atctgcaacaagaccctacatgggcagatgggggaagtgtctgggcacttcggggccagt
atgtctgaaatcggggacatcagcggggacggacagacggatgtggccatcggggctccc
atggagaatgacaataatggggccttgtacatctttcatggggaaaagggaggcctcagt
ccccagtacagacagcgcatcgaggggtcacggttttccagcaggctgcactactttggc
caggctgtcagtggcgggacagatctgacgggggatggactgccggacatcgtggtgggg
gcacaggggcaggtcctgctcctgagatcccggccagtgctcagagtcggggtctccatc
agcttccagccccccacgatccccacctcggccttcgactgccaggggcaggagcagctc
aacactgaggccagcagggcaaaggtctgcttcaccgtcactaagagcaccatggacagc
ctaggcgacaggatctccagcaccatccagtacagcctggccctggactccgggcggacg
aagatccgagccgccttcgacgccaccggccccgtcctgagcagggagctgcggctcggc
atcaagaagaaatgtgagacgtaccggataacaatacctctctgccctgaggacaccgtg
acccccatcaccctgcacctcaactacaccctgacgggggagcccatcgctgctgccggc
gacctcagacccatcctgagcgaggactctgtgctggcgtctgcaggctcgctcccgttt
cagaaggactgcggcaccgatggccgctgcgatgaccagttagcagtctccttcaatttc
tctggccttgaagagtcgaccaagtacgtcaacttctccaccaaggaggcagggacaagc
gtgccagtgacacatcggtacgaggtcaagaacctgcggcagcgaagcgtccccatctcg
gtcacattccagttccccgtggagctgagcggggtccgggtgtgggacgcctctgaggtt
gtcccctccaagccggaactggcccagtgcaccaatgacgtggaaacacccgattcaaag
gactttgtgaagcagatgagcgatcgccccctgctggactgctctgtggccacctgtaag
aagatccggtgcagaatcgcctccctggaaatgcagcagccactggagtttatgatcaaa
gggaacgtcagcttccagtgggtctcccagactcagcagcagaaagtgagtctggtgagc
gaggcccggattgaatacgaggagaagaaatacacccagaaggagggattcgtccagcgc
caggtgcagacagtggtggagcgctccgaggttgtgggcagcagcgtgnctggcctgatc
ctgctggctctcatcaccgcagccctctacaagttcggcttcttcaagcgccagtacaag
cagagggtgaaggacgctgtggagggcgaggggcctctcctgacccagagtgcaaccact
ggcaactcccctgcttccaatgctcctggtacagaacgctgcagtgcgggatattgggcg
tgcatcagacctgtccactccctccaccgacttcccttcaggagcaactcctga
DBGET
integrated database retrieval system
