Trachemys scripta elegans (red-eared slider): 117876750
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Entry
117876750 CDS
T07347
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04140
Autophagy - animal
tst04148
Efferocytosis
tst05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117876750 (VPS18)
04148 Efferocytosis
117876750 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117876750 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117876750 (VPS18)
Membrane trafficking [BR:
tst04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117876750 (VPS18)
Hops complex
117876750 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-RING_Vps41
zf-C3HC4_2
zf-RING_16
zf-RING_11
STX17_N
zf-RING_UBOX
zf-ANAPC11
zf-RING_2
DUF5600
zf-rbx1
KNOX2
Motif
Other DBs
NCBI-GeneID:
117876750
NCBI-ProteinID:
XP_034624975
LinkDB
All DBs
Position
4:60159275..60174168
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLSRSASLQQSRGNVGIPHSGYVNARLEKETPIFNKQRIDFTPPEKINSL
VVSCNQLCMSLGRDTLFRIDLGKADEPNQVELGRKDEARVYKMFLDHTGSHLVIALNTSE
CLYLNRSAQKVRTLSRWKGHLIESVGWNKFLGSETNTGPILVGTAQGQIYEAEISVSEGS
LFSTNPDQYFRLVYSLEEEAGPTPVCCLEIERALDGKCFIIATTRKRLFQFVGKVPEGTE
QQGFAFVFGMHADHLPSFREFPASFGYSEIAFYTPKLRSSPRSFAWMMGNGVLYGTLDYG
RPDSILSDERVWEYPSDVDVAAKKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDLFL
EKFGSLKRMIKDPTVGQIWIHTEKVVFRYHVQRESRDVWKMYMNINKFDLAKEYCKDRPE
CLDIVLAREAEHSFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLLKKLASL
KSSEKTQTTLLTTWLTELYLNRLGALEGDTSKRNLYEETREKFCSFLSSPRNKECLFNNR
ASIYELLASHGDTEHMVYFSVIMQDYERVVAHHCQHDDYDEALTVLTRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGTKLDARKLIPALVNYSQSGSTQQISEAIRYMEFCVCELEETE
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHRACVHVYKVM
ELYEEAVDLALQVDVDLAKSCADLPEEDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
NLLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNRHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQAVFPNLPAYKQAKLEDLQK
KLGATSQPSKAHHRPKDTDATSLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEERQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatcctggatgagtacgaagattccctgtcccgctctgcctccctgcagcag
agccgcggcaacgtgggcatcccgcactccgggtatgtgaatgctcggctggagaaggag
actccaatatttaacaagcaaaggattgatttcactcctccagagaaaattaacagcctt
gtggtctcctgtaaccagctctgtatgagccttggcagagacacgcttttcaggattgat
cttggcaaggcagatgaacctaatcaggtagagctgggacgcaaggatgaagccagagtc
tacaagatgtttttggaccacacaggatctcaccttgtgattgcactgaacactagtgaa
tgcctgtatttgaacagaagtgctcagaaggtgcggacactttcccgctggaaaggtcac
ttgattgaaagtgtgggctggaacaagtttctgggttcagagactaacactggtcctatc
ttggtggggacagcccagggccaaatatatgaggctgagatctctgtcagcgagggaagt
ctcttcagcactaatccggaccagtatttccgattggtctattccttagaggaggaggca
gggccgacccccgtctgctgtctggaaatagagcgagcgctcgatgggaaatgttttatc
attgccactactcgtaagagactattccagtttgttggcaaagtgcctgaggggacggag
cagcagggctttgccttcgtgtttggcatgcatgcagaccacttgcccagcttccgagag
ttcccagccagctttggctacagcgaaatagcattttacactccaaagctacgctcctcc
ccacgctcctttgcctggatgatgggaaatggtgtcttgtatggtacattggactatgga
cggcctgactctattctgagtgatgaacgggtctgggaatatccttctgatgtagacgtg
gcagctaagaagccgatctccatagtgctcacccagttccacttcctgctgctactgcct
gacagagtgaaggctgtgtgcactctgaatgggcaggttgtcttccaagacctgttcttg
gagaagtttggctcgttgaagcgcatgatcaaagatcccacagttgggcagatctggatt
cacacggagaaagttgtattccgctaccacgtacaacgggaatcaagagatgtgtggaag
atgtacatgaacattaacaagtttgatctggccaaagagtactgcaaagaccgtcctgag
tgcctggatattgtgttggcaagagaggcagaacactccttccaaaacaagaggtaccta
gatagtgccaagtgttatgcactgacccagaactactttgaagagattgcccttaagttc
attgaagccaagcaggaggaggcattgatggagtttctgctcaagaaactggccagctta
aagtcctctgaaaagacccagacaactttgctgaccacctggttaacagagctctacttg
aatcggctaggtgctctggaaggggacacctcgaaaaggaatctctatgaggagactcgg
gagaagttctgcagcttcctgagcagccccagaaacaaagagtgcctgttcaataaccga
gcctccatctatgagttgctagcaagccatggggacacagaacacatggtctatttttca
gttattatgcaggactatgagagagtggtagcccatcactgccagcacgatgactatgat
gaagccctaactgtccttaccagacacagagatgagaagctcttttacaagttctctccg
gtcctgatccagcacatccccaagaaggtggttgatgcttggatctctatgggcacaaaa
ctggatgccaggaagctcatacctgccctcgtcaactacagccaaagtgggagcacccaa
cagatcagtgaagctattcgatacatggaattctgtgtgtgtgagctggaggaaacggag
caagccattcacaactacctgttgtccctctatgctttgtgtaggccagactcgctgcta
tcatacctcgaacaagcaggaaccaaccctaacaggatccactatgacctgaagtatgcg
cttcggctgtgtgcggagcatggacaccaccgagcctgtgtccatgtttacaaagtgatg
gagttatatgaggaagcagtggatctagccctgcaggtggatgtggatttagcaaagtcc
tgtgcagacctccctgaagaggatgaggaactccggaagaagctctggttgaaaattgct
cgccacgtggtccaggaagagaaggatgtcaagaaggccatggcctgcctttctagctgc
aacctattaaagattgaagatgtcctgcccttcttccccgactttgtcaccatcgaccat
ttcaaggaggctatttgcaactctctggaggactacaacaggcacattgaggagctgaag
agagagatggaggaagctacacagagtgccaagagaatccgggaggacatccaggagatg
agaaacaaatatggctctgtggagcctcaggaaaagtgtgcagcctgtgactttccactc
ctaaaccgccctttctatctttttctttgcggccacatgttccactatgactgtctgttc
caggcagtttttccaaacctgcctgcctacaagcaagctaagctagaagaccttcagaag
aagctgggagccacaagccagccctccaaagcccatcatcgtcccaaggacacagatgcc
actagcttggggaagggacagcagagtcgggaacagatcaaggcagacatcgatgatatt
gtggcagctgaatgcgtgtactgtggggagctgatgatccggtccattgacaagcctttc
attgacccacaaaagtatgaagaggagaggcaaagttggctgtag
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integrated database retrieval system
