Trachemys scripta elegans (red-eared slider): 117877230
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Entry
117877230 CDS
T07347
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117877230 (SOX6)
Transcription factors [BR:
tst03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117877230 (SOX6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117877230
NCBI-ProteinID:
XP_034626006
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Position
4:99881826..100336998
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AA seq
834 aa
AA seq
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MPSSSEVLAGVVGENRTEEWKNSHYIRMSSKQATSPFACAADGEEAMTQDLASRDKEEGN
NDHHVASHLPLHTLMHNKPHSEELPTLVTTIQQDADWDSVISAQHRMESESNKLCSLYSF
RNTSTSPHKPDEGGRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYA
AQLASMQVSPGAKMPSTPQAPNTTGALSPTGMKNEKRGTSPITQVKDEAAQPLNLSARPK
TAEPVKSPTSPTQSLFPASKTSPVNVPNKSGIPSPIGGTLGRGSSLDILSSLNSPALFGD
QDTVMKAIQEARKMREQIQREQQQPPHGVDVKLPSMNNMGLNNCRNEKMPVRIDAITGRI
CIRTVDTERTRFENLGPQLTGKPSEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYC
WPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKI
LGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLM
RSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTAPSPQMTSDCSSTSASPEPSIP
VIQSTYGMKTDSGSLAGNEIINGEDEMEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaagttctgaagtgctggctggtgtggtaggagaaaacaggacagaagagtgg
aagaacagccattatataagaatgtcttccaagcaggccacctctccatttgcctgtgca
gctgatggagaggaagcaatgacccaggatttagcatcacgagacaaggaagagggcaac
aatgatcatcacgtggcctcccatctgcctctacacaccctaatgcacaacaaacctcac
tcagaggagctaccgactctggtcaccaccatccaacaagacgccgactgggacagtgtt
atctcagcccagcatagaatggagtcagagagtaataagttatgttccctatattccttc
cggaatacctctacctcaccacacaagcccgacgaaggaggtcgcgatcgcagtgagcta
atgaccagtgttaattttggaactccagaacgccgcaaaggaagccttgctgatgtggtg
gatacactgaaacagaagaaactagaggaaatgaccaggactgaacaggaagactcatct
tgcatggaaaaactactttctaaagactggaaggagaaaatggaaagactaaatacaagt
gaactccttggagaaattaaaggtacaccggaaagcctggcagaaaaagagcgacagctc
tctaccatgatcacccagctgatcagtttacgggagcagctcctggctgcccatgatgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagaacagattgcaagacaacaacagcaacttttgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacattggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacttataagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactctatgca
gctcagctggccagcatgcaggtttctcctggagccaagatgccttctactccccaggca
ccaaacacgacaggggcactctcacctactgggatgaaaaacgaaaagcgagggaccagc
cctataactcaagtgaaggatgaagcagcgcagccactgaatctctcagcccgacccaaa
acagctgaacctgtcaaatccccgacgtcaccgacgcagagcctcttcccagctagtaaa
accagtccagtgaatgtgccaaataaaagtggcatcccgagtcctatcggagggacattg
ggaagaggatcctccttagatatcctttccagtcttaactcacctgccctatttggggac
caggacacagtcatgaaagccatacaggaggctcgaaagatgagagagcagatccagagg
gagcagcagcagccgcctcatggtgtcgatgtaaaactgccctctatgaataacatgggt
ctaaacaactgcaggaatgaaaagatgccagtgcggatagatgccatcactggaaggata
tgcattagaactgtagacacagaaagaacacgctttgagaatttaggcccacaattaaca
gggaaacccagtgaagatggaaaactgggcccaggagtaattgaccttacaaggccagaa
gatgcagagggaagtaaagcaatgaatggctctgcagctaaactacagcagtattattgt
tggccaacaggaggtgccactgtggctgaagctcgagtctacagggacgcacggggccga
gccagtagtgaaccgcatatcaagcgaccaatgaacgctttcatggtttgggcaaaggat
gaacgcagaaaaattctccaagcttttcctgacatgcacaactccaatattagcaaaatc
ctaggctctcgctggaaatccatgtctaatcaagagaaacaaccttactatgaagaacag
gcacggctaagtaaaatccatctagagaagtaccctaattacaaatacaaacctcgacca
aaacgcacctgtattgttgatggcaagaaactgcgtattggagaatataaacaactgatg
aggtctcgaagacaggagatgaggcagttttttactgtgggacagcagcctcagattcca
atcaccacaggaacaggtgttgtctatcctggtgctattaccatggcaactaccgcacca
tcacctcagatgacatctgattgctctagcacctctgccagtccagagcccagcatccct
gtcattcagagcacttatggtatgaagacagacagcggaagccttgctggaaatgaaata
ataaatggagaggatgagatggaaatgtatgaggactatgaggatgatcccaaatcagac
tatagcagtgaaaatgaagcccatgaggctgtcagtgccaactga
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